miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28055 3' -54.5 NC_005887.1 + 32758 0.66 0.662473
Target:  5'- --cGCgccgGCGCGCGCcaugcagccggcucgUGCgCAGGAUCGg -3'
miRNA:   3'- cuuCGa---CGCGCGCG---------------ACGaGUUUUGGC- -5'
28055 3' -54.5 NC_005887.1 + 13367 0.66 0.657912
Target:  5'- aGAGCccgGCGaugGCGCUcgcGCUgAAGGCCGg -3'
miRNA:   3'- cUUCGa--CGCg--CGCGA---CGAgUUUUGGC- -5'
28055 3' -54.5 NC_005887.1 + 11108 0.66 0.657912
Target:  5'- -cGGCUgGUGCGCGCgaaGCU---GGCCGa -3'
miRNA:   3'- cuUCGA-CGCGCGCGa--CGAguuUUGGC- -5'
28055 3' -54.5 NC_005887.1 + 15923 0.66 0.651063
Target:  5'- -cGGCUgcaGCGCGCGUUcccgcgcggccgccaGCUCGaccaGAACCGc -3'
miRNA:   3'- cuUCGA---CGCGCGCGA---------------CGAGU----UUUGGC- -5'
28055 3' -54.5 NC_005887.1 + 310 0.66 0.646494
Target:  5'- cGAGGCcgcggUGCGCGCGUacaccgaggaagUGCgc-GAGCCGu -3'
miRNA:   3'- -CUUCG-----ACGCGCGCG------------ACGaguUUUGGC- -5'
28055 3' -54.5 NC_005887.1 + 30464 0.66 0.646494
Target:  5'- uGAAGUUGcCG-GCGCUGC-CGAAcgacgaaagaccGCCGa -3'
miRNA:   3'- -CUUCGAC-GCgCGCGACGaGUUU------------UGGC- -5'
28055 3' -54.5 NC_005887.1 + 5356 0.66 0.646494
Target:  5'- -cGGcCUGCGCGUGCUcgccggcgaGCUCGAc-CCGc -3'
miRNA:   3'- cuUC-GACGCGCGCGA---------CGAGUUuuGGC- -5'
28055 3' -54.5 NC_005887.1 + 22616 0.66 0.646494
Target:  5'- --cGCUGCGCGCGUcGC-Cu--ACUGg -3'
miRNA:   3'- cuuCGACGCGCGCGaCGaGuuuUGGC- -5'
28055 3' -54.5 NC_005887.1 + 14355 0.66 0.646494
Target:  5'- uGAAGCaGCGUGCcgggcacCUGUUCGAGucGCCGc -3'
miRNA:   3'- -CUUCGaCGCGCGc------GACGAGUUU--UGGC- -5'
28055 3' -54.5 NC_005887.1 + 6498 0.66 0.646494
Target:  5'- gGAAGUUGCGCaGaCGCUGUUCu--ACgGc -3'
miRNA:   3'- -CUUCGACGCG-C-GCGACGAGuuuUGgC- -5'
28055 3' -54.5 NC_005887.1 + 40018 0.66 0.646494
Target:  5'- --cGgUGCGCaucaugGCGCgGCUCGAGgcgGCCGg -3'
miRNA:   3'- cuuCgACGCG------CGCGaCGAGUUU---UGGC- -5'
28055 3' -54.5 NC_005887.1 + 8223 0.66 0.646494
Target:  5'- -----cGCGCGgGCUGUUCAGcAUCGa -3'
miRNA:   3'- cuucgaCGCGCgCGACGAGUUuUGGC- -5'
28055 3' -54.5 NC_005887.1 + 39922 0.66 0.646494
Target:  5'- cGAGGUgucauucgucgGCGCGgGCUucGcCUCGAAGCCa -3'
miRNA:   3'- -CUUCGa----------CGCGCgCGA--C-GAGUUUUGGc -5'
28055 3' -54.5 NC_005887.1 + 1234 0.66 0.635061
Target:  5'- gGgcGCUGCGCG-GC-GCUCAGcACgCGa -3'
miRNA:   3'- -CuuCGACGCGCgCGaCGAGUUuUG-GC- -5'
28055 3' -54.5 NC_005887.1 + 23430 0.66 0.635061
Target:  5'- --cGCUGCGagauucggugaGCGCUGCgggcuGCCGg -3'
miRNA:   3'- cuuCGACGCg----------CGCGACGaguuuUGGC- -5'
28055 3' -54.5 NC_005887.1 + 19095 0.66 0.630486
Target:  5'- cGAGCUGCGCcuuuuGCGCgccgaccgccgccGCUCGcguGCCGu -3'
miRNA:   3'- cUUCGACGCG-----CGCGa------------CGAGUuu-UGGC- -5'
28055 3' -54.5 NC_005887.1 + 5260 0.66 0.623626
Target:  5'- cGAGGCUGUGCuCGCccGCUUcgGugCGa -3'
miRNA:   3'- -CUUCGACGCGcGCGa-CGAGuuUugGC- -5'
28055 3' -54.5 NC_005887.1 + 6641 0.66 0.623626
Target:  5'- cGAGCUGCaCGCGUggauCUCgGAAACCGc -3'
miRNA:   3'- cUUCGACGcGCGCGac--GAG-UUUUGGC- -5'
28055 3' -54.5 NC_005887.1 + 6670 0.66 0.623626
Target:  5'- cGAAGCcgGCcgccgaucGCGCGCUGCUguAugUCGa -3'
miRNA:   3'- -CUUCGa-CG--------CGCGCGACGAguUuuGGC- -5'
28055 3' -54.5 NC_005887.1 + 3381 0.66 0.623626
Target:  5'- gGGAGUggUGCGCaCGCUGUUC---GCCGc -3'
miRNA:   3'- -CUUCG--ACGCGcGCGACGAGuuuUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.