Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28056 | 3' | -53.6 | NC_005887.1 | + | 34268 | 0.66 | 0.706996 |
Target: 5'- ----aGCGCUCGcGGCUugcgcAUGCCGUc -3' miRNA: 3'- gcaaaCGCGAGCuUCGGu----UACGGCGc -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 13078 | 0.66 | 0.695842 |
Target: 5'- cCGUggaacgcgGCGCUCGAucGCgGAgUGCUGCa -3' miRNA: 3'- -GCAaa------CGCGAGCUu-CGgUU-ACGGCGc -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 4117 | 0.66 | 0.694723 |
Target: 5'- ----aGCGCUCGAccaucccGGCCAcgcgcaagGCUGCGc -3' miRNA: 3'- gcaaaCGCGAGCU-------UCGGUua------CGGCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 26830 | 0.66 | 0.703658 |
Target: 5'- gCGcgUGCGCgagCGGgcgcgucugccgguAGCCGuUGCCGCc -3' miRNA: 3'- -GCaaACGCGa--GCU--------------UCGGUuACGGCGc -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 14075 | 0.66 | 0.718072 |
Target: 5'- ----cGCGCUCGGcguGCCGAUGauGCu -3' miRNA: 3'- gcaaaCGCGAGCUu--CGGUUACggCGc -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 35866 | 0.66 | 0.729057 |
Target: 5'- --aUUGCGCUCGGcAGacaccgCGAcGCCGCGc -3' miRNA: 3'- gcaAACGCGAGCU-UCg-----GUUaCGGCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 8566 | 0.66 | 0.729057 |
Target: 5'- gGUccGCGCUUggugGAAGCCcggcacGCCGCGc -3' miRNA: 3'- gCAaaCGCGAG----CUUCGGuua---CGGCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 36861 | 0.66 | 0.729057 |
Target: 5'- ----gGUGCU-GcGGCCGGUGCUGCGc -3' miRNA: 3'- gcaaaCGCGAgCuUCGGUUACGGCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 11221 | 0.66 | 0.739939 |
Target: 5'- aGgcgUGCGC-CGGaaauauacGGUCGAUgGCCGCGa -3' miRNA: 3'- gCaa-ACGCGaGCU--------UCGGUUA-CGGCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 13375 | 0.66 | 0.706996 |
Target: 5'- gCGaugGCGCUCGcgcugaAGGCCGGcGCgGCGg -3' miRNA: 3'- -GCaaaCGCGAGC------UUCGGUUaCGgCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 35531 | 0.66 | 0.718072 |
Target: 5'- ----aGCGCuUCGAAGUCAGcGCCGaUGg -3' miRNA: 3'- gcaaaCGCG-AGCUUCGGUUaCGGC-GC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 22778 | 0.66 | 0.729057 |
Target: 5'- uCGUUg--GCUCGAcGCCGGcgcgGCCGCu -3' miRNA: 3'- -GCAAacgCGAGCUuCGGUUa---CGGCGc -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 1489 | 0.67 | 0.684623 |
Target: 5'- gCGUgcgGCGCUCGcgcGgCGcgGCCGUGc -3' miRNA: 3'- -GCAaa-CGCGAGCuu-CgGUuaCGGCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 16191 | 0.67 | 0.684623 |
Target: 5'- ---cUGCGCgaaGAGGCCGc-GCUGCGa -3' miRNA: 3'- gcaaACGCGag-CUUCGGUuaCGGCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 18382 | 0.67 | 0.662035 |
Target: 5'- gCGccgGCGCUCGcgaacccgauGGCCuacGCCGCGg -3' miRNA: 3'- -GCaaaCGCGAGCu---------UCGGuuaCGGCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 37893 | 0.67 | 0.65069 |
Target: 5'- cCGUaaaGCGCUCGAAGCgGuggGUCGUu -3' miRNA: 3'- -GCAaa-CGCGAGCUUCGgUua-CGGCGc -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 11397 | 0.67 | 0.65069 |
Target: 5'- ----aGCGCUgGcGGCCGGcGCCGCc -3' miRNA: 3'- gcaaaCGCGAgCuUCGGUUaCGGCGc -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 13022 | 0.67 | 0.639327 |
Target: 5'- cCGUgaaGCaGCUCGAgcagauccacacGGCCAGcgucGCCGCGu -3' miRNA: 3'- -GCAaa-CG-CGAGCU------------UCGGUUa---CGGCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 295 | 0.67 | 0.639327 |
Target: 5'- gCGUg-GCGUgaucagCGAGGCCGcgGUGCgCGCGu -3' miRNA: 3'- -GCAaaCGCGa-----GCUUCGGU--UACG-GCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 19335 | 0.67 | 0.639327 |
Target: 5'- ----gGCGCUCGAuaAGCUGAccaUGCuCGCGc -3' miRNA: 3'- gcaaaCGCGAGCU--UCGGUU---ACG-GCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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