miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28056 3' -53.6 NC_005887.1 + 26830 0.66 0.703658
Target:  5'- gCGcgUGCGCgagCGGgcgcgucugccgguAGCCGuUGCCGCc -3'
miRNA:   3'- -GCaaACGCGa--GCU--------------UCGGUuACGGCGc -5'
28056 3' -53.6 NC_005887.1 + 11397 0.67 0.65069
Target:  5'- ----aGCGCUgGcGGCCGGcGCCGCc -3'
miRNA:   3'- gcaaaCGCGAgCuUCGGUUaCGGCGc -5'
28056 3' -53.6 NC_005887.1 + 37893 0.67 0.65069
Target:  5'- cCGUaaaGCGCUCGAAGCgGuggGUCGUu -3'
miRNA:   3'- -GCAaa-CGCGAGCUUCGgUua-CGGCGc -5'
28056 3' -53.6 NC_005887.1 + 18382 0.67 0.662035
Target:  5'- gCGccgGCGCUCGcgaacccgauGGCCuacGCCGCGg -3'
miRNA:   3'- -GCaaaCGCGAGCu---------UCGGuuaCGGCGC- -5'
28056 3' -53.6 NC_005887.1 + 15896 0.67 0.673349
Target:  5'- ---gUGCGCUCGAcgcgcagcuGGCCGAccUGCguuccgCGCGg -3'
miRNA:   3'- gcaaACGCGAGCU---------UCGGUU--ACG------GCGC- -5'
28056 3' -53.6 NC_005887.1 + 12738 0.67 0.673349
Target:  5'- ---aUGCGCUCGAucgcGCCGc-GCUGCa -3'
miRNA:   3'- gcaaACGCGAGCUu---CGGUuaCGGCGc -5'
28056 3' -53.6 NC_005887.1 + 16191 0.67 0.684623
Target:  5'- ---cUGCGCgaaGAGGCCGc-GCUGCGa -3'
miRNA:   3'- gcaaACGCGag-CUUCGGUuaCGGCGC- -5'
28056 3' -53.6 NC_005887.1 + 1489 0.67 0.684623
Target:  5'- gCGUgcgGCGCUCGcgcGgCGcgGCCGUGc -3'
miRNA:   3'- -GCAaa-CGCGAGCuu-CgGUuaCGGCGC- -5'
28056 3' -53.6 NC_005887.1 + 13078 0.66 0.695842
Target:  5'- cCGUggaacgcgGCGCUCGAucGCgGAgUGCUGCa -3'
miRNA:   3'- -GCAaa------CGCGAGCUu-CGgUU-ACGGCGc -5'
28056 3' -53.6 NC_005887.1 + 13022 0.67 0.639327
Target:  5'- cCGUgaaGCaGCUCGAgcagauccacacGGCCAGcgucGCCGCGu -3'
miRNA:   3'- -GCAaa-CG-CGAGCU------------UCGGUUa---CGGCGC- -5'
28056 3' -53.6 NC_005887.1 + 19335 0.67 0.639327
Target:  5'- ----gGCGCUCGAuaAGCUGAccaUGCuCGCGc -3'
miRNA:   3'- gcaaaCGCGAGCU--UCGGUU---ACG-GCGC- -5'
28056 3' -53.6 NC_005887.1 + 295 0.67 0.639327
Target:  5'- gCGUg-GCGUgaucagCGAGGCCGcgGUGCgCGCGu -3'
miRNA:   3'- -GCAaaCGCGa-----GCUUCGGU--UACG-GCGC- -5'
28056 3' -53.6 NC_005887.1 + 42083 0.72 0.36655
Target:  5'- ----aGCGCUgucgcgUGggGCgCGAUGCCGCGu -3'
miRNA:   3'- gcaaaCGCGA------GCuuCG-GUUACGGCGC- -5'
28056 3' -53.6 NC_005887.1 + 36726 0.7 0.492444
Target:  5'- uCGUcgUGCGaaacgauguuaaUCGu-GCCGAUGCCGCGc -3'
miRNA:   3'- -GCAa-ACGCg-----------AGCuuCGGUUACGGCGC- -5'
28056 3' -53.6 NC_005887.1 + 685 0.7 0.505285
Target:  5'- ---cUGCuGCUCGccGAGUCGAUGCUGCu -3'
miRNA:   3'- gcaaACG-CGAGC--UUCGGUUACGGCGc -5'
28056 3' -53.6 NC_005887.1 + 31386 0.69 0.516094
Target:  5'- ----cGCGCUCGGcguAGCgGugcGUGCCGUGg -3'
miRNA:   3'- gcaaaCGCGAGCU---UCGgU---UACGGCGC- -5'
28056 3' -53.6 NC_005887.1 + 435 0.69 0.560178
Target:  5'- uGUUgcUGCGCUCGAAcCCucUGgCGCGu -3'
miRNA:   3'- gCAA--ACGCGAGCUUcGGuuACgGCGC- -5'
28056 3' -53.6 NC_005887.1 + 11114 0.69 0.571373
Target:  5'- ---gUGCGCgCGAagcuGGCCGAggcGCCGUGg -3'
miRNA:   3'- gcaaACGCGaGCU----UCGGUUa--CGGCGC- -5'
28056 3' -53.6 NC_005887.1 + 3010 0.69 0.571373
Target:  5'- ----cGCGCcUGcGGCCAGcGCCGCGg -3'
miRNA:   3'- gcaaaCGCGaGCuUCGGUUaCGGCGC- -5'
28056 3' -53.6 NC_005887.1 + 33132 0.68 0.604107
Target:  5'- cCG-UUGCG-UCGGuagaagcAGCCGaccGUGCCGCGg -3'
miRNA:   3'- -GCaAACGCgAGCU-------UCGGU---UACGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.