miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28056 3' -53.6 NC_005887.1 + 295 0.67 0.639327
Target:  5'- gCGUg-GCGUgaucagCGAGGCCGcgGUGCgCGCGu -3'
miRNA:   3'- -GCAaaCGCGa-----GCUUCGGU--UACG-GCGC- -5'
28056 3' -53.6 NC_005887.1 + 435 0.69 0.560178
Target:  5'- uGUUgcUGCGCUCGAAcCCucUGgCGCGu -3'
miRNA:   3'- gCAA--ACGCGAGCUUcGGuuACgGCGC- -5'
28056 3' -53.6 NC_005887.1 + 685 0.7 0.505285
Target:  5'- ---cUGCuGCUCGccGAGUCGAUGCUGCu -3'
miRNA:   3'- gcaaACG-CGAGC--UUCGGUUACGGCGc -5'
28056 3' -53.6 NC_005887.1 + 850 0.7 0.463092
Target:  5'- cCGUcgacUUGcCGUUCG-AGCCGGUGCCauGCGg -3'
miRNA:   3'- -GCA----AAC-GCGAGCuUCGGUUACGG--CGC- -5'
28056 3' -53.6 NC_005887.1 + 1415 0.68 0.593914
Target:  5'- ---aUGCGCUCGGcguuGCCGaacucgGUGCgCGCGc -3'
miRNA:   3'- gcaaACGCGAGCUu---CGGU------UACG-GCGC- -5'
28056 3' -53.6 NC_005887.1 + 1489 0.67 0.684623
Target:  5'- gCGUgcgGCGCUCGcgcGgCGcgGCCGUGc -3'
miRNA:   3'- -GCAaa-CGCGAGCuu-CgGUuaCGGCGC- -5'
28056 3' -53.6 NC_005887.1 + 2002 0.69 0.516094
Target:  5'- aCGgccGCGCUCGAcGGCCAGUccauuucgGCgGCGa -3'
miRNA:   3'- -GCaaaCGCGAGCU-UCGGUUA--------CGgCGC- -5'
28056 3' -53.6 NC_005887.1 + 3010 0.69 0.571373
Target:  5'- ----cGCGCcUGcGGCCAGcGCCGCGg -3'
miRNA:   3'- gcaaaCGCGaGCuUCGGUUaCGGCGC- -5'
28056 3' -53.6 NC_005887.1 + 4117 0.66 0.694723
Target:  5'- ----aGCGCUCGAccaucccGGCCAcgcgcaagGCUGCGc -3'
miRNA:   3'- gcaaaCGCGAGCU-------UCGGUua------CGGCGC- -5'
28056 3' -53.6 NC_005887.1 + 4837 0.68 0.616592
Target:  5'- ---cUGCaaUCGAAGCCAAuacUGCgGCGa -3'
miRNA:   3'- gcaaACGcgAGCUUCGGUU---ACGgCGC- -5'
28056 3' -53.6 NC_005887.1 + 5010 0.67 0.65069
Target:  5'- aGgaUGCgGCgacCGAuGCCAGUGCCgGCGc -3'
miRNA:   3'- gCaaACG-CGa--GCUuCGGUUACGG-CGC- -5'
28056 3' -53.6 NC_005887.1 + 6088 0.7 0.463092
Target:  5'- aGUacGCGgaCGAAGgCAcgGCCGCGc -3'
miRNA:   3'- gCAaaCGCgaGCUUCgGUuaCGGCGC- -5'
28056 3' -53.6 NC_005887.1 + 7008 0.69 0.526995
Target:  5'- gCGUgaa-GCUCGuGGCCGGccGCCGCGg -3'
miRNA:   3'- -GCAaacgCGAGCuUCGGUUa-CGGCGC- -5'
28056 3' -53.6 NC_005887.1 + 8318 0.68 0.627958
Target:  5'- aCGagUGCGCUCGAAauGUaCAA-GCCGCa -3'
miRNA:   3'- -GCaaACGCGAGCUU--CG-GUUaCGGCGc -5'
28056 3' -53.6 NC_005887.1 + 8566 0.66 0.729057
Target:  5'- gGUccGCGCUUggugGAAGCCcggcacGCCGCGc -3'
miRNA:   3'- gCAaaCGCGAG----CUUCGGuua---CGGCGC- -5'
28056 3' -53.6 NC_005887.1 + 9133 0.7 0.505285
Target:  5'- ----gGCGCgacCGAGuGCCAGUGCgGCGc -3'
miRNA:   3'- gcaaaCGCGa--GCUU-CGGUUACGgCGC- -5'
28056 3' -53.6 NC_005887.1 + 11114 0.69 0.571373
Target:  5'- ---gUGCGCgCGAagcuGGCCGAggcGCCGUGg -3'
miRNA:   3'- gcaaACGCGaGCU----UCGGUUa--CGGCGC- -5'
28056 3' -53.6 NC_005887.1 + 11221 0.66 0.739939
Target:  5'- aGgcgUGCGC-CGGaaauauacGGUCGAUgGCCGCGa -3'
miRNA:   3'- gCaa-ACGCGaGCU--------UCGGUUA-CGGCGC- -5'
28056 3' -53.6 NC_005887.1 + 11397 0.67 0.65069
Target:  5'- ----aGCGCUgGcGGCCGGcGCCGCc -3'
miRNA:   3'- gcaaaCGCGAgCuUCGGUUaCGGCGc -5'
28056 3' -53.6 NC_005887.1 + 12738 0.67 0.673349
Target:  5'- ---aUGCGCUCGAucgcGCCGc-GCUGCa -3'
miRNA:   3'- gcaaACGCGAGCUu---CGGUuaCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.