Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28056 | 3' | -53.6 | NC_005887.1 | + | 13022 | 0.67 | 0.639327 |
Target: 5'- cCGUgaaGCaGCUCGAgcagauccacacGGCCAGcgucGCCGCGu -3' miRNA: 3'- -GCAaa-CG-CGAGCU------------UCGGUUa---CGGCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 13078 | 0.66 | 0.695842 |
Target: 5'- cCGUggaacgcgGCGCUCGAucGCgGAgUGCUGCa -3' miRNA: 3'- -GCAaa------CGCGAGCUu-CGgUU-ACGGCGc -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 13375 | 0.66 | 0.706996 |
Target: 5'- gCGaugGCGCUCGcgcugaAGGCCGGcGCgGCGg -3' miRNA: 3'- -GCaaaCGCGAGC------UUCGGUUaCGgCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 13995 | 0.97 | 0.007232 |
Target: 5'- gCGUUcGUGCUCGAAGCCAAUGCCGCGc -3' miRNA: 3'- -GCAAaCGCGAGCUUCGGUUACGGCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 14075 | 0.66 | 0.718072 |
Target: 5'- ----cGCGCUCGGcguGCCGAUGauGCu -3' miRNA: 3'- gcaaaCGCGAGCUu--CGGUUACggCGc -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 15201 | 0.67 | 0.65069 |
Target: 5'- ----cGCGCcCGuGGCCGuucgGCCGCGu -3' miRNA: 3'- gcaaaCGCGaGCuUCGGUua--CGGCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 15896 | 0.67 | 0.673349 |
Target: 5'- ---gUGCGCUCGAcgcgcagcuGGCCGAccUGCguuccgCGCGg -3' miRNA: 3'- gcaaACGCGAGCU---------UCGGUU--ACG------GCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 16191 | 0.67 | 0.684623 |
Target: 5'- ---cUGCGCgaaGAGGCCGc-GCUGCGa -3' miRNA: 3'- gcaaACGCGag-CUUCGGUuaCGGCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 17321 | 0.68 | 0.627958 |
Target: 5'- gGUUcUGCGCUacCGGcuGGCCGGcgGCCGCc -3' miRNA: 3'- gCAA-ACGCGA--GCU--UCGGUUa-CGGCGc -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 18379 | 0.67 | 0.662035 |
Target: 5'- ----cGCGCUCGAgcagugGGCCGAgGUCGuCGg -3' miRNA: 3'- gcaaaCGCGAGCU------UCGGUUaCGGC-GC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 18382 | 0.67 | 0.662035 |
Target: 5'- gCGccgGCGCUCGcgaacccgauGGCCuacGCCGCGg -3' miRNA: 3'- -GCaaaCGCGAGCu---------UCGGuuaCGGCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 19335 | 0.67 | 0.639327 |
Target: 5'- ----gGCGCUCGAuaAGCUGAccaUGCuCGCGc -3' miRNA: 3'- gcaaaCGCGAGCU--UCGGUU---ACG-GCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 22778 | 0.66 | 0.729057 |
Target: 5'- uCGUUg--GCUCGAcGCCGGcgcgGCCGCu -3' miRNA: 3'- -GCAAacgCGAGCUuCGGUUa---CGGCGc -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 23443 | 0.7 | 0.463092 |
Target: 5'- gGUgaGCGCUgCGGgcuGCCGGUGCCGgGc -3' miRNA: 3'- gCAaaCGCGA-GCUu--CGGUUACGGCgC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 23794 | 0.67 | 0.65069 |
Target: 5'- ---aUGuCGCccgCGAAGCCGGcGCCGCc -3' miRNA: 3'- gcaaAC-GCGa--GCUUCGGUUaCGGCGc -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 24922 | 0.67 | 0.684623 |
Target: 5'- ----aGCGCUCGAcgAGCgCGAuguucuucgccUGCCGCc -3' miRNA: 3'- gcaaaCGCGAGCU--UCG-GUU-----------ACGGCGc -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 26544 | 0.67 | 0.684623 |
Target: 5'- ---cUGCGcCUCGuGGUCAGugacUGCCGCa -3' miRNA: 3'- gcaaACGC-GAGCuUCGGUU----ACGGCGc -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 26830 | 0.66 | 0.703658 |
Target: 5'- gCGcgUGCGCgagCGGgcgcgucugccgguAGCCGuUGCCGCc -3' miRNA: 3'- -GCaaACGCGa--GCU--------------UCGGUuACGGCGc -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 31037 | 0.78 | 0.165267 |
Target: 5'- gGUUgcgGCGCUCGcuGCCGAgccgGCCGCu -3' miRNA: 3'- gCAAa--CGCGAGCuuCGGUUa---CGGCGc -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 31386 | 0.69 | 0.516094 |
Target: 5'- ----cGCGCUCGGcguAGCgGugcGUGCCGUGg -3' miRNA: 3'- gcaaaCGCGAGCU---UCGgU---UACGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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