Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28056 | 3' | -53.6 | NC_005887.1 | + | 435 | 0.69 | 0.560178 |
Target: 5'- uGUUgcUGCGCUCGAAcCCucUGgCGCGu -3' miRNA: 3'- gCAA--ACGCGAGCUUcGGuuACgGCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 11114 | 0.69 | 0.571373 |
Target: 5'- ---gUGCGCgCGAagcuGGCCGAggcGCCGUGg -3' miRNA: 3'- gcaaACGCGaGCU----UCGGUUa--CGGCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 3010 | 0.69 | 0.571373 |
Target: 5'- ----cGCGCcUGcGGCCAGcGCCGCGg -3' miRNA: 3'- gcaaaCGCGaGCuUCGGUUaCGGCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 33132 | 0.68 | 0.604107 |
Target: 5'- cCG-UUGCG-UCGGuagaagcAGCCGaccGUGCCGCGg -3' miRNA: 3'- -GCaAACGCgAGCU-------UCGGU---UACGGCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 295 | 0.67 | 0.639327 |
Target: 5'- gCGUg-GCGUgaucagCGAGGCCGcgGUGCgCGCGu -3' miRNA: 3'- -GCAaaCGCGa-----GCUUCGGU--UACG-GCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 19335 | 0.67 | 0.639327 |
Target: 5'- ----gGCGCUCGAuaAGCUGAccaUGCuCGCGc -3' miRNA: 3'- gcaaaCGCGAGCU--UCGGUU---ACG-GCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 13022 | 0.67 | 0.639327 |
Target: 5'- cCGUgaaGCaGCUCGAgcagauccacacGGCCAGcgucGCCGCGu -3' miRNA: 3'- -GCAaa-CG-CGAGCU------------UCGGUUa---CGGCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 23794 | 0.67 | 0.65069 |
Target: 5'- ---aUGuCGCccgCGAAGCCGGcGCCGCc -3' miRNA: 3'- gcaaAC-GCGa--GCUUCGGUUaCGGCGc -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 15201 | 0.67 | 0.65069 |
Target: 5'- ----cGCGCcCGuGGCCGuucgGCCGCGu -3' miRNA: 3'- gcaaaCGCGaGCuUCGGUua--CGGCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 40157 | 0.67 | 0.65069 |
Target: 5'- gGUUUGCGCUgccCGAucaCCGcgGCCgGCGu -3' miRNA: 3'- gCAAACGCGA---GCUuc-GGUuaCGG-CGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 5010 | 0.67 | 0.65069 |
Target: 5'- aGgaUGCgGCgacCGAuGCCAGUGCCgGCGc -3' miRNA: 3'- gCaaACG-CGa--GCUuCGGUUACGG-CGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 8318 | 0.68 | 0.627958 |
Target: 5'- aCGagUGCGCUCGAAauGUaCAA-GCCGCa -3' miRNA: 3'- -GCaaACGCGAGCUU--CG-GUUaCGGCGc -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 18379 | 0.67 | 0.662035 |
Target: 5'- ----cGCGCUCGAgcagugGGCCGAgGUCGuCGg -3' miRNA: 3'- gcaaaCGCGAGCU------UCGGUUaCGGC-GC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 24922 | 0.67 | 0.684623 |
Target: 5'- ----aGCGCUCGAcgAGCgCGAuguucuucgccUGCCGCc -3' miRNA: 3'- gcaaaCGCGAGCU--UCG-GUU-----------ACGGCGc -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 26544 | 0.67 | 0.684623 |
Target: 5'- ---cUGCGcCUCGuGGUCAGugacUGCCGCa -3' miRNA: 3'- gcaaACGC-GAGCuUCGGUU----ACGGCGc -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 35736 | 0.67 | 0.684623 |
Target: 5'- ----gGCGUugUCGGAuCCGGUGCCGCc -3' miRNA: 3'- gcaaaCGCG--AGCUUcGGUUACGGCGc -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 4117 | 0.66 | 0.694723 |
Target: 5'- ----aGCGCUCGAccaucccGGCCAcgcgcaagGCUGCGc -3' miRNA: 3'- gcaaaCGCGAGCU-------UCGGUua------CGGCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 14075 | 0.66 | 0.718072 |
Target: 5'- ----cGCGCUCGGcguGCCGAUGauGCu -3' miRNA: 3'- gcaaaCGCGAGCUu--CGGUUACggCGc -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 8566 | 0.66 | 0.729057 |
Target: 5'- gGUccGCGCUUggugGAAGCCcggcacGCCGCGc -3' miRNA: 3'- gCAaaCGCGAG----CUUCGGuua---CGGCGC- -5' |
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28056 | 3' | -53.6 | NC_005887.1 | + | 13995 | 0.97 | 0.007232 |
Target: 5'- gCGUUcGUGCUCGAAGCCAAUGCCGCGc -3' miRNA: 3'- -GCAAaCGCGAGCUUCGGUUACGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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