miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28056 3' -53.6 NC_005887.1 + 36861 0.66 0.729057
Target:  5'- ----gGUGCU-GcGGCCGGUGCUGCGc -3'
miRNA:   3'- gcaaaCGCGAgCuUCGGUUACGGCGC- -5'
28056 3' -53.6 NC_005887.1 + 7008 0.69 0.526995
Target:  5'- gCGUgaa-GCUCGuGGCCGGccGCCGCGg -3'
miRNA:   3'- -GCAaacgCGAGCuUCGGUUa-CGGCGC- -5'
28056 3' -53.6 NC_005887.1 + 39933 0.7 0.505285
Target:  5'- uCGUcgGCGCgggcuucgccUCGAAGCCAGcgGCaCGCa -3'
miRNA:   3'- -GCAaaCGCG----------AGCUUCGGUUa-CG-GCGc -5'
28056 3' -53.6 NC_005887.1 + 13995 0.97 0.007232
Target:  5'- gCGUUcGUGCUCGAAGCCAAUGCCGCGc -3'
miRNA:   3'- -GCAAaCGCGAGCUUCGGUUACGGCGC- -5'
28056 3' -53.6 NC_005887.1 + 35736 0.67 0.684623
Target:  5'- ----gGCGUugUCGGAuCCGGUGCCGCc -3'
miRNA:   3'- gcaaaCGCG--AGCUUcGGUUACGGCGc -5'
28056 3' -53.6 NC_005887.1 + 26544 0.67 0.684623
Target:  5'- ---cUGCGcCUCGuGGUCAGugacUGCCGCa -3'
miRNA:   3'- gcaaACGC-GAGCuUCGGUU----ACGGCGc -5'
28056 3' -53.6 NC_005887.1 + 18379 0.67 0.662035
Target:  5'- ----cGCGCUCGAgcagugGGCCGAgGUCGuCGg -3'
miRNA:   3'- gcaaaCGCGAGCU------UCGGUUaCGGC-GC- -5'
28056 3' -53.6 NC_005887.1 + 23794 0.67 0.65069
Target:  5'- ---aUGuCGCccgCGAAGCCGGcGCCGCc -3'
miRNA:   3'- gcaaAC-GCGa--GCUUCGGUUaCGGCGc -5'
28056 3' -53.6 NC_005887.1 + 5010 0.67 0.65069
Target:  5'- aGgaUGCgGCgacCGAuGCCAGUGCCgGCGc -3'
miRNA:   3'- gCaaACG-CGa--GCUuCGGUUACGG-CGC- -5'
28056 3' -53.6 NC_005887.1 + 1415 0.68 0.593914
Target:  5'- ---aUGCGCUCGGcguuGCCGaacucgGUGCgCGCGc -3'
miRNA:   3'- gcaaACGCGAGCUu---CGGU------UACG-GCGC- -5'
28056 3' -53.6 NC_005887.1 + 17321 0.68 0.627958
Target:  5'- gGUUcUGCGCUacCGGcuGGCCGGcgGCCGCc -3'
miRNA:   3'- gCAA-ACGCGA--GCU--UCGGUUa-CGGCGc -5'
28056 3' -53.6 NC_005887.1 + 40157 0.67 0.65069
Target:  5'- gGUUUGCGCUgccCGAucaCCGcgGCCgGCGu -3'
miRNA:   3'- gCAAACGCGA---GCUuc-GGUuaCGG-CGC- -5'
28056 3' -53.6 NC_005887.1 + 8566 0.66 0.729057
Target:  5'- gGUccGCGCUUggugGAAGCCcggcacGCCGCGc -3'
miRNA:   3'- gCAaaCGCGAG----CUUCGGuua---CGGCGC- -5'
28056 3' -53.6 NC_005887.1 + 4837 0.68 0.616592
Target:  5'- ---cUGCaaUCGAAGCCAAuacUGCgGCGa -3'
miRNA:   3'- gcaaACGcgAGCUUCGGUU---ACGgCGC- -5'
28056 3' -53.6 NC_005887.1 + 14075 0.66 0.718072
Target:  5'- ----cGCGCUCGGcguGCCGAUGauGCu -3'
miRNA:   3'- gcaaaCGCGAGCUu--CGGUUACggCGc -5'
28056 3' -53.6 NC_005887.1 + 15201 0.67 0.65069
Target:  5'- ----cGCGCcCGuGGCCGuucgGCCGCGu -3'
miRNA:   3'- gcaaaCGCGaGCuUCGGUua--CGGCGC- -5'
28056 3' -53.6 NC_005887.1 + 33236 0.68 0.601839
Target:  5'- ---aUGCGCUugcgaccagaguaaCGgcGCCGGUGcCCGCGc -3'
miRNA:   3'- gcaaACGCGA--------------GCuuCGGUUAC-GGCGC- -5'
28056 3' -53.6 NC_005887.1 + 2002 0.69 0.516094
Target:  5'- aCGgccGCGCUCGAcGGCCAGUccauuucgGCgGCGa -3'
miRNA:   3'- -GCaaaCGCGAGCU-UCGGUUA--------CGgCGC- -5'
28056 3' -53.6 NC_005887.1 + 4117 0.66 0.694723
Target:  5'- ----aGCGCUCGAccaucccGGCCAcgcgcaagGCUGCGc -3'
miRNA:   3'- gcaaaCGCGAGCU-------UCGGUua------CGGCGC- -5'
28056 3' -53.6 NC_005887.1 + 24922 0.67 0.684623
Target:  5'- ----aGCGCUCGAcgAGCgCGAuguucuucgccUGCCGCc -3'
miRNA:   3'- gcaaaCGCGAGCU--UCG-GUU-----------ACGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.