Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28057 | 3' | -52.2 | NC_005887.1 | + | 71 | 0.72 | 0.524699 |
Target: 5'- --uUCGAAAUCaACCUCGUCGuucaCGCa -3' miRNA: 3'- gacAGCUUUGGaUGGAGCAGCug--GCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 507 | 0.68 | 0.724256 |
Target: 5'- -cGUCGAcgaguaucuggucGAUCUGaacgCGUCGGCCGCc -3' miRNA: 3'- gaCAGCU-------------UUGGAUgga-GCAGCUGGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 1525 | 0.67 | 0.778322 |
Target: 5'- -cGUacccGGACCUGCUgUCGaCGACCGCg -3' miRNA: 3'- gaCAgc--UUUGGAUGG-AGCaGCUGGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 1773 | 0.73 | 0.430264 |
Target: 5'- --cUCGAcaugcucGACCUGCg-CGUCGGCCGCu -3' miRNA: 3'- gacAGCU-------UUGGAUGgaGCAGCUGGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 1807 | 0.66 | 0.836523 |
Target: 5'- gUGcgCGAGcGCCagACCgUCGUCGcuGCCGCg -3' miRNA: 3'- gACa-GCUU-UGGa-UGG-AGCAGC--UGGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 3689 | 0.66 | 0.817914 |
Target: 5'- -aGUCGGcgaucuUCUACCacgcCGUCGAgCCGCg -3' miRNA: 3'- gaCAGCUuu----GGAUGGa---GCAGCU-GGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 5812 | 0.7 | 0.618068 |
Target: 5'- cCUGcCGGAauucgcgaaauACCUGCCgccgcccgaugcugCgGUCGACCGCa -3' miRNA: 3'- -GACaGCUU-----------UGGAUGGa-------------G-CAGCUGGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 6016 | 0.71 | 0.539967 |
Target: 5'- -cGUCG--GCCUauACCUggaucgagugcgcggCGUCGACCGCc -3' miRNA: 3'- gaCAGCuuUGGA--UGGA---------------GCAGCUGGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 6308 | 0.75 | 0.339788 |
Target: 5'- -cGUCGAGGCCUugcGCCUCGcCGG-CGCc -3' miRNA: 3'- gaCAGCUUUGGA---UGGAGCaGCUgGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 6558 | 0.69 | 0.65868 |
Target: 5'- gCUGUCGccGCgCUACaaCUCGUUGAgCGCc -3' miRNA: 3'- -GACAGCuuUG-GAUG--GAGCAGCUgGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 6856 | 0.68 | 0.725345 |
Target: 5'- gUGUCG-GACCUcGCgaCGUCGGCCa- -3' miRNA: 3'- gACAGCuUUGGA-UGgaGCAGCUGGcg -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 7183 | 0.7 | 0.624838 |
Target: 5'- -gGUCGAGGCCgagAUCgugcagCGUgaCGGCCGCc -3' miRNA: 3'- gaCAGCUUUGGa--UGGa-----GCA--GCUGGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 7225 | 0.75 | 0.356041 |
Target: 5'- gCUGUCGGcgucgggcgcaucGACCaauaucaucgACCUCGgcagCGACCGCg -3' miRNA: 3'- -GACAGCU-------------UUGGa---------UGGAGCa---GCUGGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 7952 | 0.69 | 0.65868 |
Target: 5'- aCUGaUUGcAGGCCggGCCUCGcgccCGGCCGCc -3' miRNA: 3'- -GAC-AGC-UUUGGa-UGGAGCa---GCUGGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 10508 | 0.66 | 0.854229 |
Target: 5'- -cGUCGAAGCCguaUUCGgaacggggCGGCgGCa -3' miRNA: 3'- gaCAGCUUUGGaugGAGCa-------GCUGgCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 10892 | 0.7 | 0.621452 |
Target: 5'- cCUGUCGGugcACCUGCagccggcgcagaugaCGUCGGCCGg -3' miRNA: 3'- -GACAGCUu--UGGAUGga-------------GCAGCUGGCg -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 12948 | 0.76 | 0.315234 |
Target: 5'- gCUGUCG-AGCCUGa-UCG-CGACCGCg -3' miRNA: 3'- -GACAGCuUUGGAUggAGCaGCUGGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 13125 | 0.7 | 0.602292 |
Target: 5'- -gGUCGAcACCUcgagcgugccggGCCUCGUCucgucgcuuGCCGCg -3' miRNA: 3'- gaCAGCUuUGGA------------UGGAGCAGc--------UGGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 13237 | 0.67 | 0.798484 |
Target: 5'- -cGUaCGAAACCcGgCUCGUCgcGACCGa -3' miRNA: 3'- gaCA-GCUUUGGaUgGAGCAG--CUGGCg -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 13756 | 1.14 | 0.00087 |
Target: 5'- aCUGUCGAAACCUACCUCGUCGACCGCg -3' miRNA: 3'- -GACAGCUUUGGAUGGAGCAGCUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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