miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28057 3' -52.2 NC_005887.1 + 40357 0.66 0.817914
Target:  5'- -cGUCGAGcgcgGCCgUGCCgcUCGUCG-CgCGCg -3'
miRNA:   3'- gaCAGCUU----UGG-AUGG--AGCAGCuG-GCG- -5'
28057 3' -52.2 NC_005887.1 + 507 0.68 0.724256
Target:  5'- -cGUCGAcgaguaucuggucGAUCUGaacgCGUCGGCCGCc -3'
miRNA:   3'- gaCAGCU-------------UUGGAUgga-GCAGCUGGCG- -5'
28057 3' -52.2 NC_005887.1 + 34867 0.68 0.725345
Target:  5'- uUGaUCGcgGCCUcgaucGCCUUGUCGuuCGCg -3'
miRNA:   3'- gAC-AGCuuUGGA-----UGGAGCAGCugGCG- -5'
28057 3' -52.2 NC_005887.1 + 6856 0.68 0.725345
Target:  5'- gUGUCG-GACCUcGCgaCGUCGGCCa- -3'
miRNA:   3'- gACAGCuUUGGA-UGgaGCAGCUGGcg -5'
28057 3' -52.2 NC_005887.1 + 26153 0.68 0.725345
Target:  5'- --cUCGAcGACgU-CCUCGUCGAUCGUg -3'
miRNA:   3'- gacAGCU-UUGgAuGGAGCAGCUGGCG- -5'
28057 3' -52.2 NC_005887.1 + 34926 0.68 0.746916
Target:  5'- gCUGUgCGGAACUUGCCgUCGcCGGCUuCg -3'
miRNA:   3'- -GACA-GCUUUGGAUGG-AGCaGCUGGcG- -5'
28057 3' -52.2 NC_005887.1 + 1525 0.67 0.778322
Target:  5'- -cGUacccGGACCUGCUgUCGaCGACCGCg -3'
miRNA:   3'- gaCAgc--UUUGGAUGG-AGCaGCUGGCG- -5'
28057 3' -52.2 NC_005887.1 + 3689 0.66 0.817914
Target:  5'- -aGUCGGcgaucuUCUACCacgcCGUCGAgCCGCg -3'
miRNA:   3'- gaCAGCUuu----GGAUGGa---GCAGCU-GGCG- -5'
28057 3' -52.2 NC_005887.1 + 36502 0.66 0.817914
Target:  5'- ---cCGGAACCgUGCg--GUCGACCGCa -3'
miRNA:   3'- gacaGCUUUGG-AUGgagCAGCUGGCG- -5'
28057 3' -52.2 NC_005887.1 + 31240 0.68 0.722073
Target:  5'- --aUCGAAcaugccaccguucuGCC-ACCaguacUCGUCGGCCGCg -3'
miRNA:   3'- gacAGCUU--------------UGGaUGG-----AGCAGCUGGCG- -5'
28057 3' -52.2 NC_005887.1 + 16509 0.68 0.703384
Target:  5'- aUGUCGcAGGCCgAUCgCGUCG-CCGCc -3'
miRNA:   3'- gACAGC-UUUGGaUGGaGCAGCuGGCG- -5'
28057 3' -52.2 NC_005887.1 + 30151 0.69 0.681131
Target:  5'- -aGUCGgcGCCgaUGCCggCGUCGAagUCGCg -3'
miRNA:   3'- gaCAGCuuUGG--AUGGa-GCAGCU--GGCG- -5'
28057 3' -52.2 NC_005887.1 + 1773 0.73 0.430264
Target:  5'- --cUCGAcaugcucGACCUGCg-CGUCGGCCGCu -3'
miRNA:   3'- gacAGCU-------UUGGAUGgaGCAGCUGGCG- -5'
28057 3' -52.2 NC_005887.1 + 29494 0.72 0.492567
Target:  5'- aUGUCGuAGCCggcgGCCUCGacggCGGgCGCg -3'
miRNA:   3'- gACAGCuUUGGa---UGGAGCa---GCUgGCG- -5'
28057 3' -52.2 NC_005887.1 + 21476 0.71 0.578736
Target:  5'- -gGUCGGguuucucGACCUAUCUCGcaUCG-CCGCc -3'
miRNA:   3'- gaCAGCU-------UUGGAUGGAGC--AGCuGGCG- -5'
28057 3' -52.2 NC_005887.1 + 13125 0.7 0.602292
Target:  5'- -gGUCGAcACCUcgagcgugccggGCCUCGUCucgucgcuuGCCGCg -3'
miRNA:   3'- gaCAGCUuUGGA------------UGGAGCAGc--------UGGCG- -5'
28057 3' -52.2 NC_005887.1 + 10892 0.7 0.621452
Target:  5'- cCUGUCGGugcACCUGCagccggcgcagaugaCGUCGGCCGg -3'
miRNA:   3'- -GACAGCUu--UGGAUGga-------------GCAGCUGGCg -5'
28057 3' -52.2 NC_005887.1 + 6558 0.69 0.65868
Target:  5'- gCUGUCGccGCgCUACaaCUCGUUGAgCGCc -3'
miRNA:   3'- -GACAGCuuUG-GAUG--GAGCAGCUgGCG- -5'
28057 3' -52.2 NC_005887.1 + 27115 0.69 0.669924
Target:  5'- -cGUCGAcuUCaGCUUCGUCGACuCGUc -3'
miRNA:   3'- gaCAGCUuuGGaUGGAGCAGCUG-GCG- -5'
28057 3' -52.2 NC_005887.1 + 21683 0.69 0.674412
Target:  5'- -cGUCGGGggcAgCUGCaaacggugcgagcguCUCGUUGACCGCa -3'
miRNA:   3'- gaCAGCUU---UgGAUG---------------GAGCAGCUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.