Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28057 | 3' | -52.2 | NC_005887.1 | + | 27115 | 0.69 | 0.669924 |
Target: 5'- -cGUCGAcuUCaGCUUCGUCGACuCGUc -3' miRNA: 3'- gaCAGCUuuGGaUGGAGCAGCUG-GCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 21683 | 0.69 | 0.674412 |
Target: 5'- -cGUCGGGggcAgCUGCaaacggugcgagcguCUCGUUGACCGCa -3' miRNA: 3'- gaCAGCUU---UgGAUG---------------GAGCAGCUGGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 30151 | 0.69 | 0.681131 |
Target: 5'- -aGUCGgcGCCgaUGCCggCGUCGAagUCGCg -3' miRNA: 3'- gaCAGCuuUGG--AUGGa-GCAGCU--GGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 16509 | 0.68 | 0.703384 |
Target: 5'- aUGUCGcAGGCCgAUCgCGUCG-CCGCc -3' miRNA: 3'- gACAGC-UUUGGaUGGaGCAGCuGGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 33048 | 0.67 | 0.802431 |
Target: 5'- -cGUCGGcguuucggugcccguAACCUGCggCGUCG-CCGUg -3' miRNA: 3'- gaCAGCU---------------UUGGAUGgaGCAGCuGGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 21315 | 0.67 | 0.798484 |
Target: 5'- cCUGUCGAGacgaucGCCUgACCggaCGUUGAgCCGg -3' miRNA: 3'- -GACAGCUU------UGGA-UGGa--GCAGCU-GGCg -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 13237 | 0.67 | 0.798484 |
Target: 5'- -cGUaCGAAACCcGgCUCGUCgcGACCGa -3' miRNA: 3'- gaCA-GCUUUGGaUgGAGCAG--CUGGCg -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 25879 | 0.67 | 0.798484 |
Target: 5'- -cGcCGGAuCCUGCCgcgCgGUCGAgCGCa -3' miRNA: 3'- gaCaGCUUuGGAUGGa--G-CAGCUgGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 40526 | 0.67 | 0.788488 |
Target: 5'- gUGUCGccgaagauGCCgUACCagGUCGGCgGCa -3' miRNA: 3'- gACAGCuu------UGG-AUGGagCAGCUGgCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 17855 | 0.68 | 0.746916 |
Target: 5'- aCUGgCGAAGauCCUGCCgggcaUCGacgacacgaUCGGCCGCg -3' miRNA: 3'- -GACaGCUUU--GGAUGG-----AGC---------AGCUGGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 23916 | 0.68 | 0.745848 |
Target: 5'- -cGUCGAGAUCgcGCCgaucagCGUCGugcugacgacggcGCCGCg -3' miRNA: 3'- gaCAGCUUUGGa-UGGa-----GCAGC-------------UGGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 15412 | 0.67 | 0.808296 |
Target: 5'- uCUGU-GggGCCaGCagugguUCGUCGACgGCg -3' miRNA: 3'- -GACAgCuuUGGaUGg-----AGCAGCUGgCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 27105 | 0.67 | 0.808296 |
Target: 5'- aCUG-CGGcuGCCUGCUUCG--GGCCGCc -3' miRNA: 3'- -GACaGCUu-UGGAUGGAGCagCUGGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 39993 | 0.66 | 0.827326 |
Target: 5'- -cGUCGucGGCCUGCgagcgCUgGUCGcCCGCc -3' miRNA: 3'- gaCAGCu-UUGGAUG-----GAgCAGCuGGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 26453 | 0.66 | 0.836523 |
Target: 5'- -gGUCG--GCCaGCUgcgCGUCGAgCGCa -3' miRNA: 3'- gaCAGCuuUGGaUGGa--GCAGCUgGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 1807 | 0.66 | 0.836523 |
Target: 5'- gUGcgCGAGcGCCagACCgUCGUCGcuGCCGCg -3' miRNA: 3'- gACa-GCUU-UGGa-UGG-AGCAGC--UGGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 30782 | 0.66 | 0.845494 |
Target: 5'- -gGUUGAAGCCcgAUUcCG-CGACCGCc -3' miRNA: 3'- gaCAGCUUUGGa-UGGaGCaGCUGGCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 41457 | 0.66 | 0.853366 |
Target: 5'- --aUCGAAGCCgagGCCgccugacUCGUCcGGCgGCg -3' miRNA: 3'- gacAGCUUUGGa--UGG-------AGCAG-CUGgCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 10508 | 0.66 | 0.854229 |
Target: 5'- -cGUCGAAGCCguaUUCGgaacggggCGGCgGCa -3' miRNA: 3'- gaCAGCUUUGGaugGAGCa-------GCUGgCG- -5' |
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28057 | 3' | -52.2 | NC_005887.1 | + | 13756 | 1.14 | 0.00087 |
Target: 5'- aCUGUCGAAACCUACCUCGUCGACCGCg -3' miRNA: 3'- -GACAGCUUUGGAUGGAGCAGCUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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