miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28057 3' -52.2 NC_005887.1 + 14198 0.66 0.836523
Target:  5'- gCUGUCGGGcGCg-GCCUCGgacagggCGgcGCCGCg -3'
miRNA:   3'- -GACAGCUU-UGgaUGGAGCa------GC--UGGCG- -5'
28057 3' -52.2 NC_005887.1 + 14566 0.69 0.663182
Target:  5'- -cGUCGgcGCCgucgucauggcgcucUACCUCGcCGGCgCGCu -3'
miRNA:   3'- gaCAGCuuUGG---------------AUGGAGCaGCUG-GCG- -5'
28057 3' -52.2 NC_005887.1 + 15412 0.67 0.808296
Target:  5'- uCUGU-GggGCCaGCagugguUCGUCGACgGCg -3'
miRNA:   3'- -GACAgCuuUGGaUGg-----AGCAGCUGgCG- -5'
28057 3' -52.2 NC_005887.1 + 15639 0.72 0.482057
Target:  5'- aUGUCGAG--CUGCC-CG-CGGCCGCg -3'
miRNA:   3'- gACAGCUUugGAUGGaGCaGCUGGCG- -5'
28057 3' -52.2 NC_005887.1 + 16509 0.68 0.703384
Target:  5'- aUGUCGcAGGCCgAUCgCGUCG-CCGCc -3'
miRNA:   3'- gACAGC-UUUGGaUGGaGCAGCuGGCG- -5'
28057 3' -52.2 NC_005887.1 + 17360 0.69 0.669924
Target:  5'- gCUGacgcUCGGcaacuaccccGACCUGucCCUCG-CGGCCGCg -3'
miRNA:   3'- -GAC----AGCU----------UUGGAU--GGAGCaGCUGGCG- -5'
28057 3' -52.2 NC_005887.1 + 17855 0.68 0.746916
Target:  5'- aCUGgCGAAGauCCUGCCgggcaUCGacgacacgaUCGGCCGCg -3'
miRNA:   3'- -GACaGCUUU--GGAUGG-----AGC---------AGCUGGCG- -5'
28057 3' -52.2 NC_005887.1 + 20883 0.66 0.854229
Target:  5'- -gGUCGAgaAACCcgACC-CGcUGACCGUg -3'
miRNA:   3'- gaCAGCU--UUGGa-UGGaGCaGCUGGCG- -5'
28057 3' -52.2 NC_005887.1 + 21315 0.67 0.798484
Target:  5'- cCUGUCGAGacgaucGCCUgACCggaCGUUGAgCCGg -3'
miRNA:   3'- -GACAGCUU------UGGA-UGGa--GCAGCU-GGCg -5'
28057 3' -52.2 NC_005887.1 + 21476 0.71 0.578736
Target:  5'- -gGUCGGguuucucGACCUAUCUCGcaUCG-CCGCc -3'
miRNA:   3'- gaCAGCU-------UUGGAUGGAGC--AGCuGGCG- -5'
28057 3' -52.2 NC_005887.1 + 21683 0.69 0.674412
Target:  5'- -cGUCGGGggcAgCUGCaaacggugcgagcguCUCGUUGACCGCa -3'
miRNA:   3'- gaCAGCUU---UgGAUG---------------GAGCAGCUGGCG- -5'
28057 3' -52.2 NC_005887.1 + 23916 0.68 0.745848
Target:  5'- -cGUCGAGAUCgcGCCgaucagCGUCGugcugacgacggcGCCGCg -3'
miRNA:   3'- gaCAGCUUUGGa-UGGa-----GCAGC-------------UGGCG- -5'
28057 3' -52.2 NC_005887.1 + 24348 0.66 0.851633
Target:  5'- gUGUCuuGACCgu-CUCGUCGgcgacgaaccacgaGCCGCg -3'
miRNA:   3'- gACAGcuUUGGaugGAGCAGC--------------UGGCG- -5'
28057 3' -52.2 NC_005887.1 + 25879 0.67 0.798484
Target:  5'- -cGcCGGAuCCUGCCgcgCgGUCGAgCGCa -3'
miRNA:   3'- gaCaGCUUuGGAUGGa--G-CAGCUgGCG- -5'
28057 3' -52.2 NC_005887.1 + 26153 0.68 0.725345
Target:  5'- --cUCGAcGACgU-CCUCGUCGAUCGUg -3'
miRNA:   3'- gacAGCU-UUGgAuGGAGCAGCUGGCG- -5'
28057 3' -52.2 NC_005887.1 + 26453 0.66 0.836523
Target:  5'- -gGUCG--GCCaGCUgcgCGUCGAgCGCa -3'
miRNA:   3'- gaCAGCuuUGGaUGGa--GCAGCUgGCG- -5'
28057 3' -52.2 NC_005887.1 + 26694 0.66 0.817914
Target:  5'- aUGUCGcGAUacaGCCgUCGcgCGGCCGCg -3'
miRNA:   3'- gACAGCuUUGga-UGG-AGCa-GCUGGCG- -5'
28057 3' -52.2 NC_005887.1 + 27105 0.67 0.808296
Target:  5'- aCUG-CGGcuGCCUGCUUCG--GGCCGCc -3'
miRNA:   3'- -GACaGCUu-UGGAUGGAGCagCUGGCG- -5'
28057 3' -52.2 NC_005887.1 + 27115 0.69 0.669924
Target:  5'- -cGUCGAcuUCaGCUUCGUCGACuCGUc -3'
miRNA:   3'- gaCAGCUuuGGaUGGAGCAGCUG-GCG- -5'
28057 3' -52.2 NC_005887.1 + 28671 0.73 0.431249
Target:  5'- -gGUCGAGAuCCcACC-CGUCGcGCCGCu -3'
miRNA:   3'- gaCAGCUUU-GGaUGGaGCAGC-UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.