miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28057 5' -53.4 NC_005887.1 + 13793 1.12 0.000692
Target:  5'- cGGGCGGCGACGCCUACAAAUUCAGCAg -3'
miRNA:   3'- -CCCGCCGCUGCGGAUGUUUAAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 27355 0.77 0.197484
Target:  5'- cGGGCGGC-ACGCCUGCGGccugcgCGGCc -3'
miRNA:   3'- -CCCGCCGcUGCGGAUGUUuaa---GUCGu -5'
28057 5' -53.4 NC_005887.1 + 18551 0.76 0.214493
Target:  5'- uGGGCGGCGGCGCCgGCuucgcgGGCGa -3'
miRNA:   3'- -CCCGCCGCUGCGGaUGuuuaagUCGU- -5'
28057 5' -53.4 NC_005887.1 + 18795 0.75 0.245626
Target:  5'- cGGcCGGCGAUGCggGCGGcgUCAGCGu -3'
miRNA:   3'- cCC-GCCGCUGCGgaUGUUuaAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 28044 0.75 0.259094
Target:  5'- cGGcGuCGGCcuGCGCUUGCGGGUUCAGCGu -3'
miRNA:   3'- -CC-C-GCCGc-UGCGGAUGUUUAAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 17286 0.74 0.287828
Target:  5'- cGGGCGGCGccGCGCgcGCAAacgccgGUUCGGCGc -3'
miRNA:   3'- -CCCGCCGC--UGCGgaUGUU------UAAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 4418 0.74 0.287828
Target:  5'- aGGcGCGGCGAU-CCUGCAAugGUUgCAGCAg -3'
miRNA:   3'- -CC-CGCCGCUGcGGAUGUU--UAA-GUCGU- -5'
28057 5' -53.4 NC_005887.1 + 14203 0.73 0.333011
Target:  5'- cGGGCgcggccucggacagGGCGGCGCCgcgcuGUUCGGCGc -3'
miRNA:   3'- -CCCG--------------CCGCUGCGGauguuUAAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 9284 0.72 0.370405
Target:  5'- cGGCacGGCGACGCC-GCAGGUUacgGGCAc -3'
miRNA:   3'- cCCG--CCGCUGCGGaUGUUUAAg--UCGU- -5'
28057 5' -53.4 NC_005887.1 + 37785 0.72 0.388749
Target:  5'- cGGCGGCuugcuGCGCCUGCAGuuccucgUCGGUg -3'
miRNA:   3'- cCCGCCGc----UGCGGAUGUUua-----AGUCGu -5'
28057 5' -53.4 NC_005887.1 + 14298 0.72 0.388749
Target:  5'- uGGGUGGCGcaGCGCCUGCucgaUCAcGCc -3'
miRNA:   3'- -CCCGCCGC--UGCGGAUGuuuaAGU-CGu -5'
28057 5' -53.4 NC_005887.1 + 34701 0.72 0.388749
Target:  5'- cGGGCGGCcgucgucGCGCUUGCGGugcgCGGCGa -3'
miRNA:   3'- -CCCGCCGc------UGCGGAUGUUuaa-GUCGU- -5'
28057 5' -53.4 NC_005887.1 + 36529 0.72 0.398142
Target:  5'- cGGGCGGCGGCagGUauuucGCGAAUUcCGGCAg -3'
miRNA:   3'- -CCCGCCGCUG--CGga---UGUUUAA-GUCGU- -5'
28057 5' -53.4 NC_005887.1 + 35806 0.72 0.407679
Target:  5'- -cGCGGCGACaGCCccgUGAAUUCGGCGg -3'
miRNA:   3'- ccCGCCGCUG-CGGau-GUUUAAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 11852 0.71 0.437128
Target:  5'- cGGGCGGaucguuuuCGACGCUcgGCGGucuuucgucGUUCGGCAg -3'
miRNA:   3'- -CCCGCC--------GCUGCGGa-UGUU---------UAAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 35844 0.71 0.447213
Target:  5'- cGGCGuaGAucauCGCCUGCGGAUugcgcUCGGCAg -3'
miRNA:   3'- cCCGCcgCU----GCGGAUGUUUA-----AGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 26207 0.7 0.488788
Target:  5'- gGGGCGGCgGugGCCgGCcug--CAGCu -3'
miRNA:   3'- -CCCGCCG-CugCGGaUGuuuaaGUCGu -5'
28057 5' -53.4 NC_005887.1 + 34105 0.7 0.488788
Target:  5'- -aGCGGUGACGCCgaGCGc--UCGGCAg -3'
miRNA:   3'- ccCGCCGCUGCGGa-UGUuuaAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 5412 0.7 0.488788
Target:  5'- cGGCgGGCGGCGCCgcaGCGAc--CGGCGc -3'
miRNA:   3'- cCCG-CCGCUGCGGa--UGUUuaaGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 12360 0.7 0.488788
Target:  5'- aGGCGGUGACGUg-GCAGGccgagCAGCAc -3'
miRNA:   3'- cCCGCCGCUGCGgaUGUUUaa---GUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.