miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28057 5' -53.4 NC_005887.1 + 1628 0.69 0.543134
Target:  5'- cGGGCGGCGAccucgaaguCGUCUuCGA--UCGGCu -3'
miRNA:   3'- -CCCGCCGCU---------GCGGAuGUUuaAGUCGu -5'
28057 5' -53.4 NC_005887.1 + 2030 0.67 0.656233
Target:  5'- cGGCGGCGaACGUCU------UCGGCAu -3'
miRNA:   3'- cCCGCCGC-UGCGGAuguuuaAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 3474 0.66 0.73455
Target:  5'- cGGGCcuGGCG-CGCUgaugaucgagcACGAcgUCGGCAa -3'
miRNA:   3'- -CCCG--CCGCuGCGGa----------UGUUuaAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 4418 0.74 0.287828
Target:  5'- aGGcGCGGCGAU-CCUGCAAugGUUgCAGCAg -3'
miRNA:   3'- -CC-CGCCGCUGcGGAUGUU--UAA-GUCGU- -5'
28057 5' -53.4 NC_005887.1 + 5412 0.7 0.488788
Target:  5'- cGGCgGGCGGCGCCgcaGCGAc--CGGCGc -3'
miRNA:   3'- cCCG-CCGCUGCGGa--UGUUuaaGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 5911 0.66 0.73455
Target:  5'- cGGUcgccaGGCGAUGC--GCAAGUUCGGUg -3'
miRNA:   3'- cCCG-----CCGCUGCGgaUGUUUAAGUCGu -5'
28057 5' -53.4 NC_005887.1 + 7622 0.67 0.701395
Target:  5'- uGGGCGGCGACuG-CUGCccGUUCAa-- -3'
miRNA:   3'- -CCCGCCGCUG-CgGAUGuuUAAGUcgu -5'
28057 5' -53.4 NC_005887.1 + 8358 0.66 0.73455
Target:  5'- uGGCGGcCGAaGCCUGCGAA---AGCc -3'
miRNA:   3'- cCCGCC-GCUgCGGAUGUUUaagUCGu -5'
28057 5' -53.4 NC_005887.1 + 9284 0.72 0.370405
Target:  5'- cGGCacGGCGACGCC-GCAGGUUacgGGCAc -3'
miRNA:   3'- cCCG--CCGCUGCGGaUGUUUAAg--UCGU- -5'
28057 5' -53.4 NC_005887.1 + 10097 0.67 0.656233
Target:  5'- uGGGCGGCccGCGCCgACGGc--CAGCu -3'
miRNA:   3'- -CCCGCCGc-UGCGGaUGUUuaaGUCGu -5'
28057 5' -53.4 NC_005887.1 + 10150 0.68 0.622067
Target:  5'- cGGCcggaGCGACGUCUACGGcuggcaUCGGCAu -3'
miRNA:   3'- cCCGc---CGCUGCGGAUGUUua----AGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 11402 0.67 0.667589
Target:  5'- uGGCGGcCGGCGCCgccaagGCAucgUCugAGCGc -3'
miRNA:   3'- cCCGCC-GCUGCGGa-----UGUuuaAG--UCGU- -5'
28057 5' -53.4 NC_005887.1 + 11780 0.69 0.576689
Target:  5'- cGGCGGCGuccuCGCUgcucgGCGGcgUCGGUu -3'
miRNA:   3'- cCCGCCGCu---GCGGa----UGUUuaAGUCGu -5'
28057 5' -53.4 NC_005887.1 + 11852 0.71 0.437128
Target:  5'- cGGGCGGaucguuuuCGACGCUcgGCGGucuuucgucGUUCGGCAg -3'
miRNA:   3'- -CCCGCC--------GCUGCGGa-UGUU---------UAAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 11912 0.69 0.553141
Target:  5'- cGGCGGgGcucACGUCUggcgugaACAAGUUCGGCu -3'
miRNA:   3'- cCCGCCgC---UGCGGA-------UGUUUAAGUCGu -5'
28057 5' -53.4 NC_005887.1 + 12305 0.66 0.723591
Target:  5'- uGGaGCuGGCGcuCGCCUAUGAGgguggcgUCGGCGc -3'
miRNA:   3'- -CC-CG-CCGCu-GCGGAUGUUUa------AGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 12360 0.7 0.488788
Target:  5'- aGGCGGUGACGUg-GCAGGccgagCAGCAc -3'
miRNA:   3'- cCCGCCGCUGCGgaUGUUUaa---GUCGU- -5'
28057 5' -53.4 NC_005887.1 + 13793 1.12 0.000692
Target:  5'- cGGGCGGCGACGCCUACAAAUUCAGCAg -3'
miRNA:   3'- -CCCGCCGCUGCGGAUGUUUAAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 14203 0.73 0.333011
Target:  5'- cGGGCgcggccucggacagGGCGGCGCCgcgcuGUUCGGCGc -3'
miRNA:   3'- -CCCG--------------CCGCUGCGGauguuUAAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 14298 0.72 0.388749
Target:  5'- uGGGUGGCGcaGCGCCUGCucgaUCAcGCc -3'
miRNA:   3'- -CCCGCCGC--UGCGGAUGuuuaAGU-CGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.