miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28057 5' -53.4 NC_005887.1 + 35155 0.67 0.678909
Target:  5'- cGGGCGGCcgucACGCUgcACGAucUCGGCc -3'
miRNA:   3'- -CCCGCCGc---UGCGGa-UGUUuaAGUCGu -5'
28057 5' -53.4 NC_005887.1 + 26207 0.7 0.488788
Target:  5'- gGGGCGGCgGugGCCgGCcug--CAGCu -3'
miRNA:   3'- -CCCGCCG-CugCGGaUGuuuaaGUCGu -5'
28057 5' -53.4 NC_005887.1 + 11912 0.69 0.553141
Target:  5'- cGGCGGgGcucACGUCUggcgugaACAAGUUCGGCu -3'
miRNA:   3'- cCCGCCgC---UGCGGA-------UGUUUAAGUCGu -5'
28057 5' -53.4 NC_005887.1 + 11780 0.69 0.576689
Target:  5'- cGGCGGCGuccuCGCUgcucgGCGGcgUCGGUu -3'
miRNA:   3'- cCCGCCGCu---GCGGa----UGUUuaAGUCGu -5'
28057 5' -53.4 NC_005887.1 + 10150 0.68 0.622067
Target:  5'- cGGCcggaGCGACGUCUACGGcuggcaUCGGCAu -3'
miRNA:   3'- cCCGc---CGCUGCGGAUGUUua----AGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 39390 0.68 0.63346
Target:  5'- aGGcCGGCGGCGCaaccguggucGCGAccgcGUUCGGCAu -3'
miRNA:   3'- cCC-GCCGCUGCGga--------UGUU----UAAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 17535 0.67 0.644853
Target:  5'- aGGGCGGCauGACGUCgg-----UCGGCGc -3'
miRNA:   3'- -CCCGCCG--CUGCGGauguuuaAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 10097 0.67 0.656233
Target:  5'- uGGGCGGCccGCGCCgACGGc--CAGCu -3'
miRNA:   3'- -CCCGCCGc-UGCGGaUGUUuaaGUCGu -5'
28057 5' -53.4 NC_005887.1 + 11402 0.67 0.667589
Target:  5'- uGGCGGcCGGCGCCgccaagGCAucgUCugAGCGc -3'
miRNA:   3'- cCCGCC-GCUGCGGa-----UGUuuaAG--UCGU- -5'
28057 5' -53.4 NC_005887.1 + 34105 0.7 0.488788
Target:  5'- -aGCGGUGACGCCgaGCGc--UCGGCAg -3'
miRNA:   3'- ccCGCCGCUGCGGa-UGUuuaAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 12360 0.7 0.488788
Target:  5'- aGGCGGUGACGUg-GCAGGccgagCAGCAc -3'
miRNA:   3'- cCCGCCGCUGCGgaUGUUUaa---GUCGU- -5'
28057 5' -53.4 NC_005887.1 + 5412 0.7 0.488788
Target:  5'- cGGCgGGCGGCGCCgcaGCGAc--CGGCGc -3'
miRNA:   3'- cCCG-CCGCUGCGGa--UGUUuaaGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 4418 0.74 0.287828
Target:  5'- aGGcGCGGCGAU-CCUGCAAugGUUgCAGCAg -3'
miRNA:   3'- -CC-CGCCGCUGcGGAUGUU--UAA-GUCGU- -5'
28057 5' -53.4 NC_005887.1 + 17286 0.74 0.287828
Target:  5'- cGGGCGGCGccGCGCgcGCAAacgccgGUUCGGCGc -3'
miRNA:   3'- -CCCGCCGC--UGCGgaUGUU------UAAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 14203 0.73 0.333011
Target:  5'- cGGGCgcggccucggacagGGCGGCGCCgcgcuGUUCGGCGc -3'
miRNA:   3'- -CCCG--------------CCGCUGCGGauguuUAAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 9284 0.72 0.370405
Target:  5'- cGGCacGGCGACGCC-GCAGGUUacgGGCAc -3'
miRNA:   3'- cCCG--CCGCUGCGGaUGUUUAAg--UCGU- -5'
28057 5' -53.4 NC_005887.1 + 34701 0.72 0.388749
Target:  5'- cGGGCGGCcgucgucGCGCUUGCGGugcgCGGCGa -3'
miRNA:   3'- -CCCGCCGc------UGCGGAUGUUuaa-GUCGU- -5'
28057 5' -53.4 NC_005887.1 + 36529 0.72 0.398142
Target:  5'- cGGGCGGCGGCagGUauuucGCGAAUUcCGGCAg -3'
miRNA:   3'- -CCCGCCGCUG--CGga---UGUUUAA-GUCGU- -5'
28057 5' -53.4 NC_005887.1 + 11852 0.71 0.437128
Target:  5'- cGGGCGGaucguuuuCGACGCUcgGCGGucuuucgucGUUCGGCAg -3'
miRNA:   3'- -CCCGCC--------GCUGCGGa-UGUU---------UAAGUCGU- -5'
28057 5' -53.4 NC_005887.1 + 35844 0.71 0.447213
Target:  5'- cGGCGuaGAucauCGCCUGCGGAUugcgcUCGGCAg -3'
miRNA:   3'- cCCGCcgCU----GCGGAUGUUUA-----AGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.