miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28058 5' -55.7 NC_005887.1 + 41389 0.68 0.501112
Target:  5'- --cGUGCGCGaCGUGUUcucCGACGAUg -3'
miRNA:   3'- uauCGCGCGC-GCACAGcaaGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 13377 0.68 0.494788
Target:  5'- gAUGGCGCucgcgcugaaggccgGCGCGg--CGgacgUCGGCGGCa -3'
miRNA:   3'- -UAUCGCG---------------CGCGCacaGCa---AGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 30630 0.68 0.480177
Target:  5'- --cGUGCGCGcCGUG-CGcgCGGCGAa -3'
miRNA:   3'- uauCGCGCGC-GCACaGCaaGCUGCUg -5'
28058 5' -55.7 NC_005887.1 + 27422 0.68 0.46987
Target:  5'- -cAGCGCGCgGCGUG-CG-UCGAUcGCg -3'
miRNA:   3'- uaUCGCGCG-CGCACaGCaAGCUGcUG- -5'
28058 5' -55.7 NC_005887.1 + 19188 0.69 0.449603
Target:  5'- -cGGCGCGgGCGUGgagacaGGCGGCg -3'
miRNA:   3'- uaUCGCGCgCGCACagcaagCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 26131 0.69 0.449603
Target:  5'- -cGGCGCGCuucguuucGCGg--CGcUCGACGACg -3'
miRNA:   3'- uaUCGCGCG--------CGCacaGCaAGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 12705 0.69 0.449603
Target:  5'- --cGCGcCGCGCGUGa-GUgaCGACGGCg -3'
miRNA:   3'- uauCGC-GCGCGCACagCAa-GCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 7446 0.69 0.449603
Target:  5'- cUGGCGUGCGCGUcGUgaucggcaugcCGUUCG-CGAa -3'
miRNA:   3'- uAUCGCGCGCGCA-CA-----------GCAAGCuGCUg -5'
28058 5' -55.7 NC_005887.1 + 34141 0.69 0.420133
Target:  5'- -cAGCcCGCGCGUGUCGgugcgCGGguaGACa -3'
miRNA:   3'- uaUCGcGCGCGCACAGCaa---GCUg--CUG- -5'
28058 5' -55.7 NC_005887.1 + 15402 0.69 0.410573
Target:  5'- --cGCGCGCGgGcagCGgaucgUCGACGACg -3'
miRNA:   3'- uauCGCGCGCgCacaGCa----AGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 36975 0.7 0.401148
Target:  5'- -cGGCGuCGCGCGgGUCGagcUCGcCGGCg -3'
miRNA:   3'- uaUCGC-GCGCGCaCAGCa--AGCuGCUG- -5'
28058 5' -55.7 NC_005887.1 + 12627 0.7 0.391863
Target:  5'- --cGCGCgGCGCGUGauccugCGacgCGACGGCg -3'
miRNA:   3'- uauCGCG-CGCGCACa-----GCaa-GCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 28920 0.7 0.382718
Target:  5'- --uGCGCGCGCccauUG-CG-UCGACGACa -3'
miRNA:   3'- uauCGCGCGCGc---ACaGCaAGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 29516 0.7 0.372825
Target:  5'- -cGGCGgGCGCGUuguagaacagcacGUCGcgcgCGACGGCc -3'
miRNA:   3'- uaUCGCgCGCGCA-------------CAGCaa--GCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 36919 0.7 0.36486
Target:  5'- -cAGCGgGCGCGUgGUCGcgccggUCGcuGCGGCg -3'
miRNA:   3'- uaUCGCgCGCGCA-CAGCa-----AGC--UGCUG- -5'
28058 5' -55.7 NC_005887.1 + 27970 0.7 0.36486
Target:  5'- --cGCGCGCGCGc--CGagCGGCGACu -3'
miRNA:   3'- uauCGCGCGCGCacaGCaaGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 32334 0.7 0.36486
Target:  5'- -cAGCGCggccGCGCGUGaUGUggUCGGCGAUc -3'
miRNA:   3'- uaUCGCG----CGCGCACaGCA--AGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 31640 0.71 0.322788
Target:  5'- -cAGCGgcacCGCGCGguccaucgCGUUCGACGGCu -3'
miRNA:   3'- uaUCGC----GCGCGCaca-----GCAAGCUGCUG- -5'
28058 5' -55.7 NC_005887.1 + 37859 0.71 0.322788
Target:  5'- cGUAGCGgGCGCG-GUUGUUaGGCGGa -3'
miRNA:   3'- -UAUCGCgCGCGCaCAGCAAgCUGCUg -5'
28058 5' -55.7 NC_005887.1 + 30304 0.71 0.314821
Target:  5'- -cAGCGCgGCGCcuGUGUUGUcuUCGACGGu -3'
miRNA:   3'- uaUCGCG-CGCG--CACAGCA--AGCUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.