Results 1 - 20 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28059 | 5' | -56.3 | NC_005887.1 | + | 13460 | 1.09 | 0.000658 |
Target: 5'- aUUCGUAGCCGUCGACGGUCGCUACCCc -3' miRNA: 3'- -AAGCAUCGGCAGCUGCCAGCGAUGGG- -5' |
|||||||
28059 | 5' | -56.3 | NC_005887.1 | + | 26938 | 0.75 | 0.168167 |
Target: 5'- -aCGUAuGCgCGUCGACGaucCGCUGCCCg -3' miRNA: 3'- aaGCAU-CG-GCAGCUGCca-GCGAUGGG- -5' |
|||||||
28059 | 5' | -56.3 | NC_005887.1 | + | 12254 | 0.75 | 0.182529 |
Target: 5'- -gCGUAGCCGUCGaaGCGGUCGacaaguacaUGCgCCa -3' miRNA: 3'- aaGCAUCGGCAGC--UGCCAGCg--------AUG-GG- -5' |
|||||||
28059 | 5' | -56.3 | NC_005887.1 | + | 8013 | 0.74 | 0.196371 |
Target: 5'- -cCGUGGCCGgCGccACGGcacaaaacccuuucUCGCUACCCg -3' miRNA: 3'- aaGCAUCGGCaGC--UGCC--------------AGCGAUGGG- -5' |
|||||||
28059 | 5' | -56.3 | NC_005887.1 | + | 35084 | 0.74 | 0.214526 |
Target: 5'- -cCGgGGCCGaugUCG-CGGUCGCUGCCg -3' miRNA: 3'- aaGCaUCGGC---AGCuGCCAGCGAUGGg -5' |
|||||||
28059 | 5' | -56.3 | NC_005887.1 | + | 36927 | 0.74 | 0.220305 |
Target: 5'- -gCGUGGUCG-CGcCGGUCGCUgcggcgccGCCCg -3' miRNA: 3'- aaGCAUCGGCaGCuGCCAGCGA--------UGGG- -5' |
|||||||
28059 | 5' | -56.3 | NC_005887.1 | + | 23404 | 0.73 | 0.251217 |
Target: 5'- aUCGUgcguuauuGGCCGcCGACGGcCGCUGCg- -3' miRNA: 3'- aAGCA--------UCGGCaGCUGCCaGCGAUGgg -5' |
|||||||
28059 | 5' | -56.3 | NC_005887.1 | + | 14618 | 0.72 | 0.26455 |
Target: 5'- gUCGgcGCCGUCGAgGG-CGC-GCUCa -3' miRNA: 3'- aAGCauCGGCAGCUgCCaGCGaUGGG- -5' |
|||||||
28059 | 5' | -56.3 | NC_005887.1 | + | 33630 | 0.72 | 0.278451 |
Target: 5'- cUUCGUGGCCG-CGACGaagCGCUuACCg -3' miRNA: 3'- -AAGCAUCGGCaGCUGCca-GCGA-UGGg -5' |
|||||||
28059 | 5' | -56.3 | NC_005887.1 | + | 31021 | 0.72 | 0.285617 |
Target: 5'- -gCGUaccGGCCGUCGcgguuGCGGcgcUCGCUGCCg -3' miRNA: 3'- aaGCA---UCGGCAGC-----UGCC---AGCGAUGGg -5' |
|||||||
28059 | 5' | -56.3 | NC_005887.1 | + | 33707 | 0.72 | 0.292928 |
Target: 5'- uUUCGUGGCg--CGGCGGUCGauCUGCUCg -3' miRNA: 3'- -AAGCAUCGgcaGCUGCCAGC--GAUGGG- -5' |
|||||||
28059 | 5' | -56.3 | NC_005887.1 | + | 41780 | 0.71 | 0.300384 |
Target: 5'- gUCGU-GCCGaCGugGGUCGCguucaUGCCa -3' miRNA: 3'- aAGCAuCGGCaGCugCCAGCG-----AUGGg -5' |
|||||||
28059 | 5' | -56.3 | NC_005887.1 | + | 40278 | 0.7 | 0.365282 |
Target: 5'- -cCGgcuuGCCGUCGACGacgaacccguaGUCGUUGCCg -3' miRNA: 3'- aaGCau--CGGCAGCUGC-----------CAGCGAUGGg -5' |
|||||||
28059 | 5' | -56.3 | NC_005887.1 | + | 15072 | 0.69 | 0.391994 |
Target: 5'- gUCGccgaagggAGCCGcCGGCGuGUCGCagaugaUGCCCg -3' miRNA: 3'- aAGCa-------UCGGCaGCUGC-CAGCG------AUGGG- -5' |
|||||||
28059 | 5' | -56.3 | NC_005887.1 | + | 22190 | 0.69 | 0.401176 |
Target: 5'- uUUCGUuucuGuCCGgcgCGGCGGUCGCauauuacggugGCCCg -3' miRNA: 3'- -AAGCAu---C-GGCa--GCUGCCAGCGa----------UGGG- -5' |
|||||||
28059 | 5' | -56.3 | NC_005887.1 | + | 14532 | 0.69 | 0.401176 |
Target: 5'- -gCGcGGCCGUCGGCGG-CGCgucgAUCg -3' miRNA: 3'- aaGCaUCGGCAGCUGCCaGCGa---UGGg -5' |
|||||||
28059 | 5' | -56.3 | NC_005887.1 | + | 14567 | 0.69 | 0.410494 |
Target: 5'- gUCGgcGCCGUCGucAUGG-CGCUcuACCUc -3' miRNA: 3'- aAGCauCGGCAGC--UGCCaGCGA--UGGG- -5' |
|||||||
28059 | 5' | -56.3 | NC_005887.1 | + | 32121 | 0.69 | 0.410494 |
Target: 5'- gUCGauccAGUCGUCGACaG-CGCUGCUCg -3' miRNA: 3'- aAGCa---UCGGCAGCUGcCaGCGAUGGG- -5' |
|||||||
28059 | 5' | -56.3 | NC_005887.1 | + | 38234 | 0.69 | 0.439237 |
Target: 5'- -gCGUGGCCGg-GAUGGUCGagcGCUCg -3' miRNA: 3'- aaGCAUCGGCagCUGCCAGCga-UGGG- -5' |
|||||||
28059 | 5' | -56.3 | NC_005887.1 | + | 35723 | 0.68 | 0.44907 |
Target: 5'- -gCGUgcAGCUcgGUCG-CGGUCGUgGCCCa -3' miRNA: 3'- aaGCA--UCGG--CAGCuGCCAGCGaUGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home