Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28059 | 5' | -56.3 | NC_005887.1 | + | 2460 | 0.68 | 0.479275 |
Target: 5'- -aCGgcGCCGUCGACGaGgCGCUgACgCg -3' miRNA: 3'- aaGCauCGGCAGCUGC-CaGCGA-UGgG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 7416 | 0.66 | 0.608081 |
Target: 5'- gUUCGaAGCCGgCGACGGcaaguucCGCUACa- -3' miRNA: 3'- -AAGCaUCGGCaGCUGCCa------GCGAUGgg -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 7604 | 0.68 | 0.499955 |
Target: 5'- -gCGgcGCCGguugaUCGAUGGgcggcgacUGCUGCCCg -3' miRNA: 3'- aaGCauCGGC-----AGCUGCCa-------GCGAUGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 8013 | 0.74 | 0.196371 |
Target: 5'- -cCGUGGCCGgCGccACGGcacaaaacccuuucUCGCUACCCg -3' miRNA: 3'- aaGCAUCGGCaGC--UGCC--------------AGCGAUGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 12254 | 0.75 | 0.182529 |
Target: 5'- -gCGUAGCCGUCGaaGCGGUCGacaaguacaUGCgCCa -3' miRNA: 3'- aaGCAUCGGCAGC--UGCCAGCg--------AUG-GG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 12555 | 0.66 | 0.575039 |
Target: 5'- -aCGUGG-CGUCGACGGcCGCcgGCa- -3' miRNA: 3'- aaGCAUCgGCAGCUGCCaGCGa-UGgg -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 13460 | 1.09 | 0.000658 |
Target: 5'- aUUCGUAGCCGUCGACGGUCGCUACCCc -3' miRNA: 3'- -AAGCAUCGGCAGCUGCCAGCGAUGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 13981 | 0.66 | 0.564109 |
Target: 5'- -gCGaAGCCGUCGACGcGuUCG-UGCUCg -3' miRNA: 3'- aaGCaUCGGCAGCUGC-C-AGCgAUGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 14373 | 0.66 | 0.564109 |
Target: 5'- aUUCGgcccgAGCCGgCGGCGGcaagagCGaUACCCa -3' miRNA: 3'- -AAGCa----UCGGCaGCUGCCa-----GCgAUGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 14532 | 0.69 | 0.401176 |
Target: 5'- -gCGcGGCCGUCGGCGG-CGCgucgAUCg -3' miRNA: 3'- aaGCaUCGGCAGCUGCCaGCGa---UGGg -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 14567 | 0.69 | 0.410494 |
Target: 5'- gUCGgcGCCGUCGucAUGG-CGCUcuACCUc -3' miRNA: 3'- aAGCauCGGCAGC--UGCCaGCGA--UGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 14618 | 0.72 | 0.26455 |
Target: 5'- gUCGgcGCCGUCGAgGG-CGC-GCUCa -3' miRNA: 3'- aAGCauCGGCAGCUgCCaGCGaUGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 14642 | 0.67 | 0.542423 |
Target: 5'- -aCGgcAGCCGgCG-CGGU-GCUGCCCg -3' miRNA: 3'- aaGCa-UCGGCaGCuGCCAgCGAUGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 15072 | 0.69 | 0.391994 |
Target: 5'- gUCGccgaagggAGCCGcCGGCGuGUCGCagaugaUGCCCg -3' miRNA: 3'- aAGCa-------UCGGCaGCUGC-CAGCG------AUGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 19602 | 0.66 | 0.619149 |
Target: 5'- gUUGUAGCCGUCGucCGacuUCGCgagcaguguCCCg -3' miRNA: 3'- aAGCAUCGGCAGCu-GCc--AGCGau-------GGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 22190 | 0.69 | 0.401176 |
Target: 5'- uUUCGUuucuGuCCGgcgCGGCGGUCGCauauuacggugGCCCg -3' miRNA: 3'- -AAGCAu---C-GGCa--GCUGCCAGCGa----------UGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 23404 | 0.73 | 0.251217 |
Target: 5'- aUCGUgcguuauuGGCCGcCGACGGcCGCUGCg- -3' miRNA: 3'- aAGCA--------UCGGCaGCUGCCaGCGAUGgg -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 25556 | 0.66 | 0.608081 |
Target: 5'- gUUCGUAGCUGcuUCcGCGuG-CGCUGCCa -3' miRNA: 3'- -AAGCAUCGGC--AGcUGC-CaGCGAUGGg -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 26938 | 0.75 | 0.168167 |
Target: 5'- -aCGUAuGCgCGUCGACGaucCGCUGCCCg -3' miRNA: 3'- aaGCAU-CG-GCAGCUGCca-GCGAUGGG- -5' |
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28059 | 5' | -56.3 | NC_005887.1 | + | 27819 | 0.67 | 0.542423 |
Target: 5'- aUCGacgcGCCGcCGACGGcCGC-GCCUg -3' miRNA: 3'- aAGCau--CGGCaGCUGCCaGCGaUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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