miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28059 5' -56.3 NC_005887.1 + 14618 0.72 0.26455
Target:  5'- gUCGgcGCCGUCGAgGG-CGC-GCUCa -3'
miRNA:   3'- aAGCauCGGCAGCUgCCaGCGaUGGG- -5'
28059 5' -56.3 NC_005887.1 + 25556 0.66 0.608081
Target:  5'- gUUCGUAGCUGcuUCcGCGuG-CGCUGCCa -3'
miRNA:   3'- -AAGCAUCGGC--AGcUGC-CaGCGAUGGg -5'
28059 5' -56.3 NC_005887.1 + 12555 0.66 0.575039
Target:  5'- -aCGUGG-CGUCGACGGcCGCcgGCa- -3'
miRNA:   3'- aaGCAUCgGCAGCUGCCaGCGa-UGgg -5'
28059 5' -56.3 NC_005887.1 + 29496 0.66 0.564109
Target:  5'- gUCGUAGCCGgcggccUCGACGGcgggCGCgUugUa -3'
miRNA:   3'- aAGCAUCGGC------AGCUGCCa---GCG-AugGg -5'
28059 5' -56.3 NC_005887.1 + 34748 0.67 0.553234
Target:  5'- cUUCGaAGCCGUCGAaguccuucaGGUCGCcguUCUg -3'
miRNA:   3'- -AAGCaUCGGCAGCUg--------CCAGCGau-GGG- -5'
28059 5' -56.3 NC_005887.1 + 14642 0.67 0.542423
Target:  5'- -aCGgcAGCCGgCG-CGGU-GCUGCCCg -3'
miRNA:   3'- aaGCa-UCGGCaGCuGCCAgCGAUGGG- -5'
28059 5' -56.3 NC_005887.1 + 41271 0.67 0.521021
Target:  5'- -aUGgcGCCGUCGAccugcgcaCGGgcgCGCUGCUg -3'
miRNA:   3'- aaGCauCGGCAGCU--------GCCa--GCGAUGGg -5'
28059 5' -56.3 NC_005887.1 + 28714 0.67 0.510443
Target:  5'- gUCGUAGUCGUCGAaCGacacgcgcgCGCUAUCg -3'
miRNA:   3'- aAGCAUCGGCAGCU-GCca-------GCGAUGGg -5'
28059 5' -56.3 NC_005887.1 + 7604 0.68 0.499955
Target:  5'- -gCGgcGCCGguugaUCGAUGGgcggcgacUGCUGCCCg -3'
miRNA:   3'- aaGCauCGGC-----AGCUGCCa-------GCGAUGGG- -5'
28059 5' -56.3 NC_005887.1 + 2460 0.68 0.479275
Target:  5'- -aCGgcGCCGUCGACGaGgCGCUgACgCg -3'
miRNA:   3'- aaGCauCGGCAGCUGC-CaGCGA-UGgG- -5'
28059 5' -56.3 NC_005887.1 + 35723 0.68 0.44907
Target:  5'- -gCGUgcAGCUcgGUCG-CGGUCGUgGCCCa -3'
miRNA:   3'- aaGCA--UCGG--CAGCuGCCAGCGaUGGG- -5'
28059 5' -56.3 NC_005887.1 + 33707 0.72 0.292928
Target:  5'- uUUCGUGGCg--CGGCGGUCGauCUGCUCg -3'
miRNA:   3'- -AAGCAUCGgcaGCUGCCAGC--GAUGGG- -5'
28059 5' -56.3 NC_005887.1 + 41780 0.71 0.300384
Target:  5'- gUCGU-GCCGaCGugGGUCGCguucaUGCCa -3'
miRNA:   3'- aAGCAuCGGCaGCugCCAGCG-----AUGGg -5'
28059 5' -56.3 NC_005887.1 + 15072 0.69 0.391994
Target:  5'- gUCGccgaagggAGCCGcCGGCGuGUCGCagaugaUGCCCg -3'
miRNA:   3'- aAGCa-------UCGGCaGCUGC-CAGCG------AUGGG- -5'
28059 5' -56.3 NC_005887.1 + 22190 0.69 0.401176
Target:  5'- uUUCGUuucuGuCCGgcgCGGCGGUCGCauauuacggugGCCCg -3'
miRNA:   3'- -AAGCAu---C-GGCa--GCUGCCAGCGa----------UGGG- -5'
28059 5' -56.3 NC_005887.1 + 14532 0.69 0.401176
Target:  5'- -gCGcGGCCGUCGGCGG-CGCgucgAUCg -3'
miRNA:   3'- aaGCaUCGGCAGCUGCCaGCGa---UGGg -5'
28059 5' -56.3 NC_005887.1 + 32121 0.69 0.410494
Target:  5'- gUCGauccAGUCGUCGACaG-CGCUGCUCg -3'
miRNA:   3'- aAGCa---UCGGCAGCUGcCaGCGAUGGG- -5'
28059 5' -56.3 NC_005887.1 + 38234 0.69 0.439237
Target:  5'- -gCGUGGCCGg-GAUGGUCGagcGCUCg -3'
miRNA:   3'- aaGCAUCGGCagCUGCCAGCga-UGGG- -5'
28059 5' -56.3 NC_005887.1 + 13460 1.09 0.000658
Target:  5'- aUUCGUAGCCGUCGACGGUCGCUACCCc -3'
miRNA:   3'- -AAGCAUCGGCAGCUGCCAGCGAUGGG- -5'
28059 5' -56.3 NC_005887.1 + 33656 0.66 0.608081
Target:  5'- -----cGCCG-CGGCGGaUCGCcggGCCCu -3'
miRNA:   3'- aagcauCGGCaGCUGCC-AGCGa--UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.