Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28061 | 5' | -47.9 | NC_005887.1 | + | 4285 | 0.74 | 0.634863 |
Target: 5'- cCAACGCa--ACACGAA-GGGGAACGAc -3' miRNA: 3'- -GUUGUGgauUGUGCUUgCCUCUUGCU- -5' |
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28061 | 5' | -47.9 | NC_005887.1 | + | 3953 | 0.71 | 0.792915 |
Target: 5'- gCAGCGCaCUGAC-CGAAcCGGAGAucgcaaugugcaACGAa -3' miRNA: 3'- -GUUGUG-GAUUGuGCUU-GCCUCU------------UGCU- -5' |
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28061 | 5' | -47.9 | NC_005887.1 | + | 3893 | 0.69 | 0.877326 |
Target: 5'- aCGACGCCaugccgGAUguGCGGAUGGcGAACGAc -3' miRNA: 3'- -GUUGUGGa-----UUG--UGCUUGCCuCUUGCU- -5' |
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28061 | 5' | -47.9 | NC_005887.1 | + | 2332 | 0.72 | 0.749928 |
Target: 5'- uGGCAUCUAugGCGAucCGGcGGGCGAc -3' miRNA: 3'- gUUGUGGAUugUGCUu-GCCuCUUGCU- -5' |
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28061 | 5' | -47.9 | NC_005887.1 | + | 1613 | 0.69 | 0.900632 |
Target: 5'- gCGAuCGCCUcGACGCGGGCGGcGAccuCGAa -3' miRNA: 3'- -GUU-GUGGA-UUGUGCUUGCCuCUu--GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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