miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28065 3' -64.4 NC_005887.1 + 41592 0.69 0.136899
Target:  5'- -cGGCCaGCGGCggcccagguGCGGCGgccGGCgcGGCCc -3'
miRNA:   3'- uuCCGG-CGCUG---------CGCCGCa--CCGa-CCGG- -5'
28065 3' -64.4 NC_005887.1 + 13953 0.69 0.140622
Target:  5'- -cGGCUGCGACGUGcGCGUGaCgacaGCCg -3'
miRNA:   3'- uuCCGGCGCUGCGC-CGCACcGac--CGG- -5'
28065 3' -64.4 NC_005887.1 + 38162 0.68 0.152356
Target:  5'- cAGGCCgagcGCGAaauagGCGGUGUGcaGCaUGGCCg -3'
miRNA:   3'- uUCCGG----CGCUg----CGCCGCAC--CG-ACCGG- -5'
28065 3' -64.4 NC_005887.1 + 30996 0.68 0.152356
Target:  5'- cGGGgUGCGucucucGCGUGGCGcGGCgcaGGCCa -3'
miRNA:   3'- uUCCgGCGC------UGCGCCGCaCCGa--CCGG- -5'
28065 3' -64.4 NC_005887.1 + 30473 0.68 0.160665
Target:  5'- cAGGCggugCGCGACGCGGCccGUGcGUUGcGCa -3'
miRNA:   3'- uUCCG----GCGCUGCGCCG--CAC-CGAC-CGg -5'
28065 3' -64.4 NC_005887.1 + 13392 0.68 0.169381
Target:  5'- gAAGGCCG--GCGCGGCGgacgucGGC-GGCa -3'
miRNA:   3'- -UUCCGGCgcUGCGCCGCa-----CCGaCCGg -5'
28065 3' -64.4 NC_005887.1 + 17193 0.68 0.173895
Target:  5'- -cGGCCGC-ACGCGGCaauGUUGcGCCg -3'
miRNA:   3'- uuCCGGCGcUGCGCCGcacCGAC-CGG- -5'
28065 3' -64.4 NC_005887.1 + 10031 0.67 0.178517
Target:  5'- -cGGCgUGUGGuccuacgcacUGCGGCGcgccGGCUGGCCc -3'
miRNA:   3'- uuCCG-GCGCU----------GCGCCGCa---CCGACCGG- -5'
28065 3' -64.4 NC_005887.1 + 7715 0.67 0.183247
Target:  5'- -cGGCgCGCcucgucGACGCgaacGGCGaaUGGCUGGCg -3'
miRNA:   3'- uuCCG-GCG------CUGCG----CCGC--ACCGACCGg -5'
28065 3' -64.4 NC_005887.1 + 35330 0.67 0.183247
Target:  5'- --uGCCGCGcgcCGCGGC--GGCcGGCCa -3'
miRNA:   3'- uucCGGCGCu--GCGCCGcaCCGaCCGG- -5'
28065 3' -64.4 NC_005887.1 + 7028 0.67 0.183726
Target:  5'- --cGCCGCGgcGCGCGGCaGUGGagcgaugcagagaaGGCCg -3'
miRNA:   3'- uucCGGCGC--UGCGCCG-CACCga------------CCGG- -5'
28065 3' -64.4 NC_005887.1 + 29026 0.67 0.187599
Target:  5'- cGAGauCCGCGAUGCGGCc-GGCguugccgaacgccUGGCCg -3'
miRNA:   3'- -UUCc-GGCGCUGCGCCGcaCCG-------------ACCGG- -5'
28065 3' -64.4 NC_005887.1 + 1487 0.67 0.188088
Target:  5'- -cGGCgUGCGGCGCucGCGcGGCgcGGCCg -3'
miRNA:   3'- uuCCG-GCGCUGCGc-CGCaCCGa-CCGG- -5'
28065 3' -64.4 NC_005887.1 + 16462 0.67 0.19254
Target:  5'- cGGGCaugcgcucgaccgCGCGGCaggaucCGGCG-GGCUGGUCg -3'
miRNA:   3'- uUCCG-------------GCGCUGc-----GCCGCaCCGACCGG- -5'
28065 3' -64.4 NC_005887.1 + 30330 0.67 0.193041
Target:  5'- -cGGuuGCGA-GCGGCGUGcGUgcGCCg -3'
miRNA:   3'- uuCCggCGCUgCGCCGCAC-CGacCGG- -5'
28065 3' -64.4 NC_005887.1 + 32339 0.67 0.198108
Target:  5'- -cGGCCGCG-CGUGaUGUGGUcGGCg -3'
miRNA:   3'- uuCCGGCGCuGCGCcGCACCGaCCGg -5'
28065 3' -64.4 NC_005887.1 + 30434 0.66 0.20859
Target:  5'- cAGGCCGaCGuCGgGGCGgGGCaUGuuGCCg -3'
miRNA:   3'- uUCCGGC-GCuGCgCCGCaCCG-AC--CGG- -5'
28065 3' -64.4 NC_005887.1 + 41795 0.66 0.210743
Target:  5'- -cGGCgGUcuucgcgcuguauccGGCGCGGCGcgcGGC-GGCCg -3'
miRNA:   3'- uuCCGgCG---------------CUGCGCCGCa--CCGaCCGG- -5'
28065 3' -64.4 NC_005887.1 + 23236 0.66 0.214008
Target:  5'- -cGGCaCGCGA-GCGGCGgcGGUcGGCg -3'
miRNA:   3'- uuCCG-GCGCUgCGCCGCa-CCGaCCGg -5'
28065 3' -64.4 NC_005887.1 + 32426 0.66 0.214008
Target:  5'- -cGGCgGCGAUGUGGCc-GGC-GGCg -3'
miRNA:   3'- uuCCGgCGCUGCGCCGcaCCGaCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.