miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28066 3' -51.8 NC_005887.1 + 30349 0.68 0.743732
Target:  5'- -cGGUUUUCA-AUGcccCGAUGCCGAGCu -3'
miRNA:   3'- cuUCAAAAGUcUGCc--GCUGCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 11820 0.68 0.710653
Target:  5'- uAAGg---CAGGCGGCGGCcuguucUCGAGCa -3'
miRNA:   3'- cUUCaaaaGUCUGCCGCUGc-----GGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 5404 0.68 0.710653
Target:  5'- -cGGUgaaCcGGCgGGCGGCGCCGcAGCg -3'
miRNA:   3'- cuUCAaaaGuCUG-CCGCUGCGGC-UCG- -5'
28066 3' -51.8 NC_005887.1 + 4779 0.68 0.732811
Target:  5'- gGAAGcugacgcCAGcCGGCGAgGCCGuGCu -3'
miRNA:   3'- -CUUCaaaa---GUCuGCCGCUgCGGCuCG- -5'
28066 3' -51.8 NC_005887.1 + 11620 0.68 0.732811
Target:  5'- cAGGUg--CAGAgCGuGCGcaAUGCCGAGCu -3'
miRNA:   3'- cUUCAaaaGUCU-GC-CGC--UGCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 35566 0.68 0.732811
Target:  5'- ------aUguG-CGGCGAgCGCCGGGCa -3'
miRNA:   3'- cuucaaaAguCuGCCGCU-GCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 40885 0.68 0.743732
Target:  5'- aGAAGaaacgcGACGGUGACGaCGAGCc -3'
miRNA:   3'- -CUUCaaaaguCUGCCGCUGCgGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 24877 0.68 0.743732
Target:  5'- -------cCAGGCGGCGGCcgauGCCGcGCg -3'
miRNA:   3'- cuucaaaaGUCUGCCGCUG----CGGCuCG- -5'
28066 3' -51.8 NC_005887.1 + 27749 0.68 0.743732
Target:  5'- -------aCGGAagUGGcCGAUGCCGAGCg -3'
miRNA:   3'- cuucaaaaGUCU--GCC-GCUGCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 18232 0.68 0.699442
Target:  5'- aAGGUgaUCGccuCGGCcACGCCGGGCa -3'
miRNA:   3'- cUUCAaaAGUcu-GCCGcUGCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 40796 0.69 0.681363
Target:  5'- cGAGGU--UCGuGGCGGCGACGCgccgcucgacgaugaCGAGg -3'
miRNA:   3'- -CUUCAaaAGU-CUGCCGCUGCG---------------GCUCg -5'
28066 3' -51.8 NC_005887.1 + 18373 0.69 0.676821
Target:  5'- -------gUAGACGGCG-CGCCG-GCg -3'
miRNA:   3'- cuucaaaaGUCUGCCGCuGCGGCuCG- -5'
28066 3' -51.8 NC_005887.1 + 25946 0.77 0.263261
Target:  5'- -----aUUUAGACGGUggcccggcaGACGCCGAGCa -3'
miRNA:   3'- cuucaaAAGUCUGCCG---------CUGCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 18539 0.75 0.324247
Target:  5'- gGgcGUUcUCgguGGGCGGCGGCGCCG-GCu -3'
miRNA:   3'- -CuuCAAaAG---UCUGCCGCUGCGGCuCG- -5'
28066 3' -51.8 NC_005887.1 + 12358 0.73 0.453459
Target:  5'- -------cCAGGCGGUGACguggcagGCCGAGCa -3'
miRNA:   3'- cuucaaaaGUCUGCCGCUG-------CGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 5809 0.72 0.464842
Target:  5'- -------cCAGACGGCGGCGaUCGAGUc -3'
miRNA:   3'- cuucaaaaGUCUGCCGCUGC-GGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 9282 0.72 0.475318
Target:  5'- ------gUCGGcACGGCGACGCCGcagguuacgGGCa -3'
miRNA:   3'- cuucaaaAGUC-UGCCGCUGCGGC---------UCG- -5'
28066 3' -51.8 NC_005887.1 + 14213 0.72 0.507422
Target:  5'- ------cUCGGACagGGCGGCGCCGcGCu -3'
miRNA:   3'- cuucaaaAGUCUG--CCGCUGCGGCuCG- -5'
28066 3' -51.8 NC_005887.1 + 17278 0.69 0.665435
Target:  5'- cGAGacgUCGGGCGGCGcCGCgCGcGCa -3'
miRNA:   3'- cUUCaaaAGUCUGCCGCuGCG-GCuCG- -5'
28066 3' -51.8 NC_005887.1 + 2694 0.69 0.676821
Target:  5'- uGAAGcgUaCGGGCGGCaaGCgGCCGAGCc -3'
miRNA:   3'- -CUUCaaAaGUCUGCCGc-UG-CGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.