Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28066 | 3' | -51.8 | NC_005887.1 | + | 899 | 0.69 | 0.688161 |
Target: 5'- ------cUCGcGCGGCG-UGCCGAGCa -3' miRNA: 3'- cuucaaaAGUcUGCCGCuGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 1087 | 0.72 | 0.518329 |
Target: 5'- -cAGg--UC-GACGGCgccauugccGACGCCGAGCa -3' miRNA: 3'- cuUCaaaAGuCUGCCG---------CUGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 2020 | 0.68 | 0.748067 |
Target: 5'- -cAGUccaUUUCGG-CGGCGAacgucuucggcauguCGUCGAGCu -3' miRNA: 3'- cuUCA---AAAGUCuGCCGCU---------------GCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 2694 | 0.69 | 0.676821 |
Target: 5'- uGAAGcgUaCGGGCGGCaaGCgGCCGAGCc -3' miRNA: 3'- -CUUCaaAaGUCUGCCGc-UG-CGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 4779 | 0.68 | 0.732811 |
Target: 5'- gGAAGcugacgcCAGcCGGCGAgGCCGuGCu -3' miRNA: 3'- -CUUCaaaa---GUCuGCCGCUgCGGCuCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 5404 | 0.68 | 0.710653 |
Target: 5'- -cGGUgaaCcGGCgGGCGGCGCCGcAGCg -3' miRNA: 3'- cuUCAaaaGuCUG-CCGCUGCGGC-UCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 5809 | 0.72 | 0.464842 |
Target: 5'- -------cCAGACGGCGGCGaUCGAGUc -3' miRNA: 3'- cuucaaaaGUCUGCCGCUGC-GGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 6430 | 0.72 | 0.475318 |
Target: 5'- --uGUggcCGGACGGCcGCGCCGAGa -3' miRNA: 3'- cuuCAaaaGUCUGCCGcUGCGGCUCg -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 6469 | 0.66 | 0.844141 |
Target: 5'- uGAAGUacgggcgCGGcgucGCGGUGucUGCCGAGCg -3' miRNA: 3'- -CUUCAaaa----GUC----UGCCGCu-GCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 7214 | 0.67 | 0.775712 |
Target: 5'- --cGUgcgCAGGCGcuguCGGCGUCGGGCg -3' miRNA: 3'- cuuCAaaaGUCUGCc---GCUGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 9282 | 0.72 | 0.475318 |
Target: 5'- ------gUCGGcACGGCGACGCCGcagguuacgGGCa -3' miRNA: 3'- cuucaaaAGUC-UGCCGCUGCGGC---------UCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 10634 | 0.66 | 0.853038 |
Target: 5'- cGGAGcc--UGGGCGGCGuCGuuGGGCc -3' miRNA: 3'- -CUUCaaaaGUCUGCCGCuGCggCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 11388 | 0.66 | 0.814101 |
Target: 5'- cGAAGUUccucacguacgCGGGCGcCGAcaucacCGCCGAGCg -3' miRNA: 3'- -CUUCAAaa---------GUCUGCcGCU------GCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 11394 | 0.67 | 0.796249 |
Target: 5'- cGGAGcg--CuGGCGGcCGGCGCCGccaaGGCa -3' miRNA: 3'- -CUUCaaaaGuCUGCC-GCUGCGGC----UCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 11620 | 0.68 | 0.732811 |
Target: 5'- cAGGUg--CAGAgCGuGCGcaAUGCCGAGCu -3' miRNA: 3'- cUUCAaaaGUCU-GC-CGC--UGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 11820 | 0.68 | 0.710653 |
Target: 5'- uAAGg---CAGGCGGCGGCcuguucUCGAGCa -3' miRNA: 3'- cUUCaaaaGUCUGCCGCUGc-----GGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 11964 | 1.01 | 0.006028 |
Target: 5'- cGAAGUUUUCAGA-GGCGACGCCGAGCg -3' miRNA: 3'- -CUUCAAAAGUCUgCCGCUGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 12358 | 0.73 | 0.453459 |
Target: 5'- -------cCAGGCGGUGACguggcagGCCGAGCa -3' miRNA: 3'- cuucaaaaGUCUGCCGCUG-------CGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 13792 | 0.68 | 0.710653 |
Target: 5'- -------gCGGGCGGCGACGCCuacaaauucAGCa -3' miRNA: 3'- cuucaaaaGUCUGCCGCUGCGGc--------UCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 14151 | 0.66 | 0.816044 |
Target: 5'- --------gAGACGcGCGGCGCUGAuGCg -3' miRNA: 3'- cuucaaaagUCUGC-CGCUGCGGCU-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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