miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28066 3' -51.8 NC_005887.1 + 14213 0.72 0.507422
Target:  5'- ------cUCGGACagGGCGGCGCCGcGCu -3'
miRNA:   3'- cuucaaaAGUCUG--CCGCUGCGGCuCG- -5'
28066 3' -51.8 NC_005887.1 + 15657 0.66 0.844141
Target:  5'- --cGUgucgCAGAU-GCG-CGCCGAGCu -3'
miRNA:   3'- cuuCAaaa-GUCUGcCGCuGCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 16384 0.66 0.816044
Target:  5'- cGAAGUgucgaAGAugcuCGGCGucUGCCGGGCc -3'
miRNA:   3'- -CUUCAaaag-UCU----GCCGCu-GCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 17278 0.69 0.665435
Target:  5'- cGAGacgUCGGGCGGCGcCGCgCGcGCa -3'
miRNA:   3'- cUUCaaaAGUCUGCCGCuGCG-GCuCG- -5'
28066 3' -51.8 NC_005887.1 + 18232 0.68 0.699442
Target:  5'- aAGGUgaUCGccuCGGCcACGCCGGGCa -3'
miRNA:   3'- cUUCAaaAGUcu-GCCGcUGCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 18373 0.69 0.676821
Target:  5'- -------gUAGACGGCG-CGCCG-GCg -3'
miRNA:   3'- cuucaaaaGUCUGCCGCuGCGGCuCG- -5'
28066 3' -51.8 NC_005887.1 + 18539 0.75 0.324247
Target:  5'- gGgcGUUcUCgguGGGCGGCGGCGCCG-GCu -3'
miRNA:   3'- -CuuCAAaAG---UCUGCCGCUGCGGCuCG- -5'
28066 3' -51.8 NC_005887.1 + 19199 0.66 0.816044
Target:  5'- uGGAGa---CAGGCGGCGcgguuACGaCGAGCg -3'
miRNA:   3'- -CUUCaaaaGUCUGCCGC-----UGCgGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 20162 0.66 0.806245
Target:  5'- ------gUCAaGCGGCGGCGCCGuuGUu -3'
miRNA:   3'- cuucaaaAGUcUGCCGCUGCGGCu-CG- -5'
28066 3' -51.8 NC_005887.1 + 21059 0.68 0.743732
Target:  5'- --cGUgaau-GugGGCGACGCC-AGCa -3'
miRNA:   3'- cuuCAaaaguCugCCGCUGCGGcUCG- -5'
28066 3' -51.8 NC_005887.1 + 23468 0.66 0.844141
Target:  5'- gGAAGcccggCAGcCGGCGACGCCc--- -3'
miRNA:   3'- -CUUCaaaa-GUCuGCCGCUGCGGcucg -5'
28066 3' -51.8 NC_005887.1 + 24107 0.67 0.775712
Target:  5'- --cGUga-CGGugccCGGCGugGCCGAGg -3'
miRNA:   3'- cuuCAaaaGUCu---GCCGCugCGGCUCg -5'
28066 3' -51.8 NC_005887.1 + 24609 0.67 0.786067
Target:  5'- ------aUCAGcCGcGCGGCcguGCCGAGCg -3'
miRNA:   3'- cuucaaaAGUCuGC-CGCUG---CGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 24877 0.68 0.743732
Target:  5'- -------cCAGGCGGCGGCcgauGCCGcGCg -3'
miRNA:   3'- cuucaaaaGUCUGCCGCUG----CGGCuCG- -5'
28066 3' -51.8 NC_005887.1 + 24980 0.66 0.853038
Target:  5'- cGAGGga--CAGGuCGGgGuaguUGCCGAGCg -3'
miRNA:   3'- -CUUCaaaaGUCU-GCCgCu---GCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 25035 0.67 0.786067
Target:  5'- gGAAGUg--CAGcacGCGGUG-CGCCGAaccgGCg -3'
miRNA:   3'- -CUUCAaaaGUC---UGCCGCuGCGGCU----CG- -5'
28066 3' -51.8 NC_005887.1 + 25946 0.77 0.263261
Target:  5'- -----aUUUAGACGGUggcccggcaGACGCCGAGCa -3'
miRNA:   3'- cuucaaAAGUCUGCCG---------CUGCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 27749 0.68 0.743732
Target:  5'- -------aCGGAagUGGcCGAUGCCGAGCg -3'
miRNA:   3'- cuucaaaaGUCU--GCC-GCUGCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 27961 0.67 0.775712
Target:  5'- -cAGg--UCGuACGcGCGcGCGCCGAGCg -3'
miRNA:   3'- cuUCaaaAGUcUGC-CGC-UGCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 28279 0.66 0.853038
Target:  5'- ------aUCAu-CGGC-ACGCCGAGCg -3'
miRNA:   3'- cuucaaaAGUcuGCCGcUGCGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.