miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28066 3' -51.8 NC_005887.1 + 13792 0.68 0.710653
Target:  5'- -------gCGGGCGGCGACGCCuacaaauucAGCa -3'
miRNA:   3'- cuucaaaaGUCUGCCGCUGCGGc--------UCG- -5'
28066 3' -51.8 NC_005887.1 + 11820 0.68 0.710653
Target:  5'- uAAGg---CAGGCGGCGGCcuguucUCGAGCa -3'
miRNA:   3'- cUUCaaaaGUCUGCCGCUGc-----GGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 35566 0.68 0.732811
Target:  5'- ------aUguG-CGGCGAgCGCCGGGCa -3'
miRNA:   3'- cuucaaaAguCuGCCGCU-GCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 4779 0.68 0.732811
Target:  5'- gGAAGcugacgcCAGcCGGCGAgGCCGuGCu -3'
miRNA:   3'- -CUUCaaaa---GUCuGCCGCUgCGGCuCG- -5'
28066 3' -51.8 NC_005887.1 + 11620 0.68 0.732811
Target:  5'- cAGGUg--CAGAgCGuGCGcaAUGCCGAGCu -3'
miRNA:   3'- cUUCAaaaGUCU-GC-CGC--UGCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 40885 0.68 0.743732
Target:  5'- aGAAGaaacgcGACGGUGACGaCGAGCc -3'
miRNA:   3'- -CUUCaaaaguCUGCCGCUGCgGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 30349 0.68 0.743732
Target:  5'- -cGGUUUUCA-AUGcccCGAUGCCGAGCu -3'
miRNA:   3'- cuUCAAAAGUcUGCc--GCUGCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 24877 0.68 0.743732
Target:  5'- -------cCAGGCGGCGGCcgauGCCGcGCg -3'
miRNA:   3'- cuucaaaaGUCUGCCGCUG----CGGCuCG- -5'
28066 3' -51.8 NC_005887.1 + 21059 0.68 0.743732
Target:  5'- --cGUgaau-GugGGCGACGCC-AGCa -3'
miRNA:   3'- cuuCAaaaguCugCCGCUGCGGcUCG- -5'
28066 3' -51.8 NC_005887.1 + 27749 0.68 0.743732
Target:  5'- -------aCGGAagUGGcCGAUGCCGAGCg -3'
miRNA:   3'- cuucaaaaGUCU--GCC-GCUGCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 2020 0.68 0.748067
Target:  5'- -cAGUccaUUUCGG-CGGCGAacgucuucggcauguCGUCGAGCu -3'
miRNA:   3'- cuUCA---AAAGUCuGCCGCU---------------GCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 27961 0.67 0.775712
Target:  5'- -cAGg--UCGuACGcGCGcGCGCCGAGCg -3'
miRNA:   3'- cuUCaaaAGUcUGC-CGC-UGCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 7214 0.67 0.775712
Target:  5'- --cGUgcgCAGGCGcuguCGGCGUCGGGCg -3'
miRNA:   3'- cuuCAaaaGUCUGCc---GCUGCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 24107 0.67 0.775712
Target:  5'- --cGUga-CGGugccCGGCGugGCCGAGg -3'
miRNA:   3'- cuuCAaaaGUCu---GCCGCugCGGCUCg -5'
28066 3' -51.8 NC_005887.1 + 24609 0.67 0.786067
Target:  5'- ------aUCAGcCGcGCGGCcguGCCGAGCg -3'
miRNA:   3'- cuucaaaAGUCuGC-CGCUG---CGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 25035 0.67 0.786067
Target:  5'- gGAAGUg--CAGcacGCGGUG-CGCCGAaccgGCg -3'
miRNA:   3'- -CUUCAaaaGUC---UGCCGCuGCGGCU----CG- -5'
28066 3' -51.8 NC_005887.1 + 11394 0.67 0.796249
Target:  5'- cGGAGcg--CuGGCGGcCGGCGCCGccaaGGCa -3'
miRNA:   3'- -CUUCaaaaGuCUGCC-GCUGCGGC----UCG- -5'
28066 3' -51.8 NC_005887.1 + 20162 0.66 0.806245
Target:  5'- ------gUCAaGCGGCGGCGCCGuuGUu -3'
miRNA:   3'- cuucaaaAGUcUGCCGCUGCGGCu-CG- -5'
28066 3' -51.8 NC_005887.1 + 11388 0.66 0.814101
Target:  5'- cGAAGUUccucacguacgCGGGCGcCGAcaucacCGCCGAGCg -3'
miRNA:   3'- -CUUCAAaa---------GUCUGCcGCU------GCGGCUCG- -5'
28066 3' -51.8 NC_005887.1 + 19199 0.66 0.816044
Target:  5'- uGGAGa---CAGGCGGCGcgguuACGaCGAGCg -3'
miRNA:   3'- -CUUCaaaaGUCUGCCGC-----UGCgGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.