Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28066 | 3' | -51.8 | NC_005887.1 | + | 7214 | 0.67 | 0.775712 |
Target: 5'- --cGUgcgCAGGCGcuguCGGCGUCGGGCg -3' miRNA: 3'- cuuCAaaaGUCUGCc---GCUGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 27961 | 0.67 | 0.775712 |
Target: 5'- -cAGg--UCGuACGcGCGcGCGCCGAGCg -3' miRNA: 3'- cuUCaaaAGUcUGC-CGC-UGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 2020 | 0.68 | 0.748067 |
Target: 5'- -cAGUccaUUUCGG-CGGCGAacgucuucggcauguCGUCGAGCu -3' miRNA: 3'- cuUCA---AAAGUCuGCCGCU---------------GCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 30349 | 0.68 | 0.743732 |
Target: 5'- -cGGUUUUCA-AUGcccCGAUGCCGAGCu -3' miRNA: 3'- cuUCAAAAGUcUGCc--GCUGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 21059 | 0.68 | 0.743732 |
Target: 5'- --cGUgaau-GugGGCGACGCC-AGCa -3' miRNA: 3'- cuuCAaaaguCugCCGCUGCGGcUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 40885 | 0.68 | 0.743732 |
Target: 5'- aGAAGaaacgcGACGGUGACGaCGAGCc -3' miRNA: 3'- -CUUCaaaaguCUGCCGCUGCgGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 24877 | 0.68 | 0.743732 |
Target: 5'- -------cCAGGCGGCGGCcgauGCCGcGCg -3' miRNA: 3'- cuucaaaaGUCUGCCGCUG----CGGCuCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 27749 | 0.68 | 0.743732 |
Target: 5'- -------aCGGAagUGGcCGAUGCCGAGCg -3' miRNA: 3'- cuucaaaaGUCU--GCC-GCUGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 11620 | 0.68 | 0.732811 |
Target: 5'- cAGGUg--CAGAgCGuGCGcaAUGCCGAGCu -3' miRNA: 3'- cUUCAaaaGUCU-GC-CGC--UGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 35566 | 0.68 | 0.732811 |
Target: 5'- ------aUguG-CGGCGAgCGCCGGGCa -3' miRNA: 3'- cuucaaaAguCuGCCGCU-GCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 4779 | 0.68 | 0.732811 |
Target: 5'- gGAAGcugacgcCAGcCGGCGAgGCCGuGCu -3' miRNA: 3'- -CUUCaaaa---GUCuGCCGCUgCGGCuCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 5404 | 0.68 | 0.710653 |
Target: 5'- -cGGUgaaCcGGCgGGCGGCGCCGcAGCg -3' miRNA: 3'- cuUCAaaaGuCUG-CCGCUGCGGC-UCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 11820 | 0.68 | 0.710653 |
Target: 5'- uAAGg---CAGGCGGCGGCcuguucUCGAGCa -3' miRNA: 3'- cUUCaaaaGUCUGCCGCUGc-----GGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 13792 | 0.68 | 0.710653 |
Target: 5'- -------gCGGGCGGCGACGCCuacaaauucAGCa -3' miRNA: 3'- cuucaaaaGUCUGCCGCUGCGGc--------UCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 18232 | 0.68 | 0.699442 |
Target: 5'- aAGGUgaUCGccuCGGCcACGCCGGGCa -3' miRNA: 3'- cUUCAaaAGUcu-GCCGcUGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 899 | 0.69 | 0.688161 |
Target: 5'- ------cUCGcGCGGCG-UGCCGAGCa -3' miRNA: 3'- cuucaaaAGUcUGCCGCuGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 40796 | 0.69 | 0.681363 |
Target: 5'- cGAGGU--UCGuGGCGGCGACGCgccgcucgacgaugaCGAGg -3' miRNA: 3'- -CUUCAaaAGU-CUGCCGCUGCG---------------GCUCg -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 2694 | 0.69 | 0.676821 |
Target: 5'- uGAAGcgUaCGGGCGGCaaGCgGCCGAGCc -3' miRNA: 3'- -CUUCaaAaGUCUGCCGc-UG-CGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 18373 | 0.69 | 0.676821 |
Target: 5'- -------gUAGACGGCG-CGCCG-GCg -3' miRNA: 3'- cuucaaaaGUCUGCCGCuGCGGCuCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 17278 | 0.69 | 0.665435 |
Target: 5'- cGAGacgUCGGGCGGCGcCGCgCGcGCa -3' miRNA: 3'- cUUCaaaAGUCUGCCGCuGCG-GCuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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