Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28066 | 3' | -51.8 | NC_005887.1 | + | 11964 | 1.01 | 0.006028 |
Target: 5'- cGAAGUUUUCAGA-GGCGACGCCGAGCg -3' miRNA: 3'- -CUUCAAAAGUCUgCCGCUGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 34099 | 0.77 | 0.256329 |
Target: 5'- -------cCAGugaGCGGUGACGCCGAGCg -3' miRNA: 3'- cuucaaaaGUC---UGCCGCUGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 25946 | 0.77 | 0.263261 |
Target: 5'- -----aUUUAGACGGUggcccggcaGACGCCGAGCa -3' miRNA: 3'- cuucaaAAGUCUGCCG---------CUGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 18539 | 0.75 | 0.324247 |
Target: 5'- gGgcGUUcUCgguGGGCGGCGGCGCCG-GCu -3' miRNA: 3'- -CuuCAAaAG---UCUGCCGCUGCGGCuCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 12358 | 0.73 | 0.453459 |
Target: 5'- -------cCAGGCGGUGACguggcagGCCGAGCa -3' miRNA: 3'- cuucaaaaGUCUGCCGCUG-------CGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 5809 | 0.72 | 0.464842 |
Target: 5'- -------cCAGACGGCGGCGaUCGAGUc -3' miRNA: 3'- cuucaaaaGUCUGCCGCUGC-GGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 6430 | 0.72 | 0.475318 |
Target: 5'- --uGUggcCGGACGGCcGCGCCGAGa -3' miRNA: 3'- cuuCAaaaGUCUGCCGcUGCGGCUCg -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 9282 | 0.72 | 0.475318 |
Target: 5'- ------gUCGGcACGGCGACGCCGcagguuacgGGCa -3' miRNA: 3'- cuucaaaAGUC-UGCCGCUGCGGC---------UCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 38096 | 0.72 | 0.496614 |
Target: 5'- cGAGcagUUCAGACuGCGuGCgGCCGAGCg -3' miRNA: 3'- cUUCaa-AAGUCUGcCGC-UG-CGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 14213 | 0.72 | 0.507422 |
Target: 5'- ------cUCGGACagGGCGGCGCCGcGCu -3' miRNA: 3'- cuucaaaAGUCUG--CCGCUGCGGCuCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 1087 | 0.72 | 0.518329 |
Target: 5'- -cAGg--UC-GACGGCgccauugccGACGCCGAGCa -3' miRNA: 3'- cuUCaaaAGuCUGCCG---------CUGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 35418 | 0.7 | 0.631123 |
Target: 5'- -------cCAGACGGCGcggcccAUGCCGAGUu -3' miRNA: 3'- cuucaaaaGUCUGCCGC------UGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 30934 | 0.69 | 0.654016 |
Target: 5'- --uGUUgcgcUCAGACgaugccuuGGCGGCGCCG-GCc -3' miRNA: 3'- cuuCAAa---AGUCUG--------CCGCUGCGGCuCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 17278 | 0.69 | 0.665435 |
Target: 5'- cGAGacgUCGGGCGGCGcCGCgCGcGCa -3' miRNA: 3'- cUUCaaaAGUCUGCCGCuGCG-GCuCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 2694 | 0.69 | 0.676821 |
Target: 5'- uGAAGcgUaCGGGCGGCaaGCgGCCGAGCc -3' miRNA: 3'- -CUUCaaAaGUCUGCCGc-UG-CGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 18373 | 0.69 | 0.676821 |
Target: 5'- -------gUAGACGGCG-CGCCG-GCg -3' miRNA: 3'- cuucaaaaGUCUGCCGCuGCGGCuCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 40796 | 0.69 | 0.681363 |
Target: 5'- cGAGGU--UCGuGGCGGCGACGCgccgcucgacgaugaCGAGg -3' miRNA: 3'- -CUUCAaaAGU-CUGCCGCUGCG---------------GCUCg -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 899 | 0.69 | 0.688161 |
Target: 5'- ------cUCGcGCGGCG-UGCCGAGCa -3' miRNA: 3'- cuucaaaAGUcUGCCGCuGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 18232 | 0.68 | 0.699442 |
Target: 5'- aAGGUgaUCGccuCGGCcACGCCGGGCa -3' miRNA: 3'- cUUCAaaAGUcu-GCCGcUGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 5404 | 0.68 | 0.710653 |
Target: 5'- -cGGUgaaCcGGCgGGCGGCGCCGcAGCg -3' miRNA: 3'- cuUCAaaaGuCUG-CCGCUGCGGC-UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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