Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28066 | 3' | -51.8 | NC_005887.1 | + | 40885 | 0.68 | 0.743732 |
Target: 5'- aGAAGaaacgcGACGGUGACGaCGAGCc -3' miRNA: 3'- -CUUCaaaaguCUGCCGCUGCgGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 40796 | 0.69 | 0.681363 |
Target: 5'- cGAGGU--UCGuGGCGGCGACGCgccgcucgacgaugaCGAGg -3' miRNA: 3'- -CUUCAaaAGU-CUGCCGCUGCG---------------GCUCg -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 38096 | 0.72 | 0.496614 |
Target: 5'- cGAGcagUUCAGACuGCGuGCgGCCGAGCg -3' miRNA: 3'- cUUCaa-AAGUCUGcCGC-UG-CGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 37201 | 0.66 | 0.825633 |
Target: 5'- ------aUCAG-CGGCgcgccGACGUCGGGCa -3' miRNA: 3'- cuucaaaAGUCuGCCG-----CUGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 36300 | 0.66 | 0.853038 |
Target: 5'- -cGGUUggccgaucugCGcGGCGGuCGACGCCGcGCa -3' miRNA: 3'- cuUCAAaa--------GU-CUGCC-GCUGCGGCuCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 35566 | 0.68 | 0.732811 |
Target: 5'- ------aUguG-CGGCGAgCGCCGGGCa -3' miRNA: 3'- cuucaaaAguCuGCCGCU-GCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 35418 | 0.7 | 0.631123 |
Target: 5'- -------cCAGACGGCGcggcccAUGCCGAGUu -3' miRNA: 3'- cuucaaaaGUCUGCCGC------UGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 34099 | 0.77 | 0.256329 |
Target: 5'- -------cCAGugaGCGGUGACGCCGAGCg -3' miRNA: 3'- cuucaaaaGUC---UGCCGCUGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 33051 | 0.66 | 0.835003 |
Target: 5'- -cGGcgUUUCGGugcccguaaccuGCGGCGuCGCCGuGCc -3' miRNA: 3'- cuUCa-AAAGUC------------UGCCGCuGCGGCuCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 30934 | 0.69 | 0.654016 |
Target: 5'- --uGUUgcgcUCAGACgaugccuuGGCGGCGCCG-GCc -3' miRNA: 3'- cuuCAAa---AGUCUG--------CCGCUGCGGCuCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 30349 | 0.68 | 0.743732 |
Target: 5'- -cGGUUUUCA-AUGcccCGAUGCCGAGCu -3' miRNA: 3'- cuUCAAAAGUcUGCc--GCUGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 29849 | 0.66 | 0.85216 |
Target: 5'- uGAGGaugucgCAGGCGaugaacacguccuGCGGCagGCCGAGCg -3' miRNA: 3'- -CUUCaaaa--GUCUGC-------------CGCUG--CGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 29729 | 0.66 | 0.844141 |
Target: 5'- -cAGUggcuggUCGGGCuucuGCGucagcACGCCGAGCg -3' miRNA: 3'- cuUCAaa----AGUCUGc---CGC-----UGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 28279 | 0.66 | 0.853038 |
Target: 5'- ------aUCAu-CGGC-ACGCCGAGCg -3' miRNA: 3'- cuucaaaAGUcuGCCGcUGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 27961 | 0.67 | 0.775712 |
Target: 5'- -cAGg--UCGuACGcGCGcGCGCCGAGCg -3' miRNA: 3'- cuUCaaaAGUcUGC-CGC-UGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 27749 | 0.68 | 0.743732 |
Target: 5'- -------aCGGAagUGGcCGAUGCCGAGCg -3' miRNA: 3'- cuucaaaaGUCU--GCC-GCUGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 25946 | 0.77 | 0.263261 |
Target: 5'- -----aUUUAGACGGUggcccggcaGACGCCGAGCa -3' miRNA: 3'- cuucaaAAGUCUGCCG---------CUGCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 25035 | 0.67 | 0.786067 |
Target: 5'- gGAAGUg--CAGcacGCGGUG-CGCCGAaccgGCg -3' miRNA: 3'- -CUUCAaaaGUC---UGCCGCuGCGGCU----CG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 24980 | 0.66 | 0.853038 |
Target: 5'- cGAGGga--CAGGuCGGgGuaguUGCCGAGCg -3' miRNA: 3'- -CUUCaaaaGUCU-GCCgCu---GCGGCUCG- -5' |
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28066 | 3' | -51.8 | NC_005887.1 | + | 24877 | 0.68 | 0.743732 |
Target: 5'- -------cCAGGCGGCGGCcgauGCCGcGCg -3' miRNA: 3'- cuucaaaaGUCUGCCGCUG----CGGCuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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