miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28069 3' -60.6 NC_005887.1 + 7296 0.71 0.18539
Target:  5'- -cGCuGUGGGUcgucgugucGCCGucCGUCGCCGCCGa -3'
miRNA:   3'- caUG-CGCCCG---------CGGCu-GUAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 11386 0.71 0.18539
Target:  5'- -aGCGCagccGGaGCGCUGGCGgccggCGCCGCCa -3'
miRNA:   3'- caUGCG----CC-CGCGGCUGUa----GUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 12554 0.71 0.190338
Target:  5'- -gACGU-GGCGUCGACG--GCCGCCGg -3'
miRNA:   3'- caUGCGcCCGCGGCUGUagUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 28917 0.7 0.19489
Target:  5'- cGUGCugaGCGGuGCGCCGcuCGUCgcagcagcggcuuGCCGCCGa -3'
miRNA:   3'- -CAUG---CGCC-CGCGGCu-GUAG-------------UGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 35075 0.7 0.19489
Target:  5'- ---aGCGGGCggccgggGCCGAUgucgcgGUCGCUGCCGa -3'
miRNA:   3'- caugCGCCCG-------CGGCUG------UAGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 18803 0.7 0.195402
Target:  5'- -gAUGCGGGCGgCGucaGCGUaCGCUGCCa -3'
miRNA:   3'- caUGCGCCCGCgGC---UGUA-GUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 2937 0.7 0.195402
Target:  5'- cUGCGCaaGCGCCG-CggCACCGCCGc -3'
miRNA:   3'- cAUGCGccCGCGGCuGuaGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 23974 0.7 0.195402
Target:  5'- gGUuCGCGaGCGCCGGCG-CGCCGUCu -3'
miRNA:   3'- -CAuGCGCcCGCGGCUGUaGUGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 15930 0.7 0.200583
Target:  5'- -cGCGCGGGCcggaaucgaugcGCCGGCcacgCGCCGCa- -3'
miRNA:   3'- caUGCGCCCG------------CGGCUGua--GUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 14563 0.7 0.200583
Target:  5'- cUGCGUcGGCGCCGuCGUCAuggcgcucuaccUCGCCGg -3'
miRNA:   3'- cAUGCGcCCGCGGCuGUAGU------------GGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 18411 0.7 0.205883
Target:  5'- cGUGCGCagacGGCcgcgagGCCGACGUCAUCGCg- -3'
miRNA:   3'- -CAUGCGc---CCG------CGGCUGUAGUGGCGgc -5'
28069 3' -60.6 NC_005887.1 + 6401 0.7 0.216847
Target:  5'- cGUACGCGGaaGUCGACAaggCGCUgGCCGa -3'
miRNA:   3'- -CAUGCGCCcgCGGCUGUa--GUGG-CGGC- -5'
28069 3' -60.6 NC_005887.1 + 13621 0.7 0.216847
Target:  5'- -aGCGCGGcGCGCggCGGCcgCACUcaGCCGa -3'
miRNA:   3'- caUGCGCC-CGCG--GCUGuaGUGG--CGGC- -5'
28069 3' -60.6 NC_005887.1 + 14765 0.7 0.216847
Target:  5'- -aACGCGGGUuacgaccaccucGCCGACcagAUCAacCCGCUGg -3'
miRNA:   3'- caUGCGCCCG------------CGGCUG---UAGU--GGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 39835 0.7 0.220801
Target:  5'- -cGCGaCGGGcCGCCGucGCAcaucaaucgaccgcUCACCGCUGa -3'
miRNA:   3'- caUGC-GCCC-GCGGC--UGU--------------AGUGGCGGC- -5'
28069 3' -60.6 NC_005887.1 + 32741 0.7 0.222514
Target:  5'- -aGCGCGGcgcucgcgugcGCGCCGGCGcgCGCCaugcaGCCGg -3'
miRNA:   3'- caUGCGCC-----------CGCGGCUGUa-GUGG-----CGGC- -5'
28069 3' -60.6 NC_005887.1 + 19822 0.7 0.222514
Target:  5'- -aACGgGGGCGUCGACGacaCACUGgCGa -3'
miRNA:   3'- caUGCgCCCGCGGCUGUa--GUGGCgGC- -5'
28069 3' -60.6 NC_005887.1 + 31417 0.69 0.228307
Target:  5'- cUGCGCguaaucGGGCgugagcaggccgGCCGACGUCAUcugCGCCGg -3'
miRNA:   3'- cAUGCG------CCCG------------CGGCUGUAGUG---GCGGC- -5'
28069 3' -60.6 NC_005887.1 + 24811 0.69 0.234227
Target:  5'- aGUACGCGc-CGaCCGACGUCauGCCGCCc -3'
miRNA:   3'- -CAUGCGCccGC-GGCUGUAG--UGGCGGc -5'
28069 3' -60.6 NC_005887.1 + 6037 0.69 0.234227
Target:  5'- aGUGCGC-GGCGUCGAC--CGCCGCg- -3'
miRNA:   3'- -CAUGCGcCCGCGGCUGuaGUGGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.