miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28072 3' -54.9 NC_005887.1 + 10473 1.08 0.000935
Target:  5'- gCCGACGCCCACCACCACCGAUUUCAAg -3'
miRNA:   3'- -GGCUGCGGGUGGUGGUGGCUAAAGUU- -5'
28072 3' -54.9 NC_005887.1 + 28958 0.76 0.187722
Target:  5'- gCCGACGUCCGCCGC-GCCGGccUUCAGc -3'
miRNA:   3'- -GGCUGCGGGUGGUGgUGGCUa-AAGUU- -5'
28072 3' -54.9 NC_005887.1 + 30416 0.75 0.209367
Target:  5'- gCCGAguuCGCCCACCAUCagGCCGAcgUCGGg -3'
miRNA:   3'- -GGCU---GCGGGUGGUGG--UGGCUaaAGUU- -5'
28072 3' -54.9 NC_005887.1 + 22854 0.74 0.259123
Target:  5'- gCCGAUGCUCGCCGgCAUCGGgaUCAGc -3'
miRNA:   3'- -GGCUGCGGGUGGUgGUGGCUaaAGUU- -5'
28072 3' -54.9 NC_005887.1 + 40765 0.72 0.310224
Target:  5'- uUGGCGCgCCGCgCGCCGCCGAgccggcggUCGAg -3'
miRNA:   3'- gGCUGCG-GGUG-GUGGUGGCUaa------AGUU- -5'
28072 3' -54.9 NC_005887.1 + 5576 0.72 0.310224
Target:  5'- gCCGACGCUgACCugCGCCaGUUcgUCGAg -3'
miRNA:   3'- -GGCUGCGGgUGGugGUGGcUAA--AGUU- -5'
28072 3' -54.9 NC_005887.1 + 10384 0.72 0.326168
Target:  5'- gCCGACGUCgACUAUCGCCGGccUCGGg -3'
miRNA:   3'- -GGCUGCGGgUGGUGGUGGCUaaAGUU- -5'
28072 3' -54.9 NC_005887.1 + 874 0.72 0.334365
Target:  5'- gCGugGCCCG-CGCCGCCGGacgagUCAGg -3'
miRNA:   3'- gGCugCGGGUgGUGGUGGCUaa---AGUU- -5'
28072 3' -54.9 NC_005887.1 + 23808 0.71 0.368645
Target:  5'- gCCGGCG-CCGCCGCCcACCGAg----- -3'
miRNA:   3'- -GGCUGCgGGUGGUGG-UGGCUaaaguu -5'
28072 3' -54.9 NC_005887.1 + 5151 0.71 0.386666
Target:  5'- cCCGACGUCgGCgCGCCGCUGAUg---- -3'
miRNA:   3'- -GGCUGCGGgUG-GUGGUGGCUAaaguu -5'
28072 3' -54.9 NC_005887.1 + 37729 0.71 0.395891
Target:  5'- gCCGGCGgCCACCGgCGCCGcgg-CGAg -3'
miRNA:   3'- -GGCUGCgGGUGGUgGUGGCuaaaGUU- -5'
28072 3' -54.9 NC_005887.1 + 39711 0.71 0.395891
Target:  5'- gCGAgUGCCCGCCGCCACC----UCAu -3'
miRNA:   3'- gGCU-GCGGGUGGUGGUGGcuaaAGUu -5'
28072 3' -54.9 NC_005887.1 + 11405 0.69 0.454107
Target:  5'- gCgGGCGCCgaCAUCACCGCCGAgcgCGc -3'
miRNA:   3'- -GgCUGCGG--GUGGUGGUGGCUaaaGUu -5'
28072 3' -54.9 NC_005887.1 + 25019 0.69 0.464256
Target:  5'- gCCGGCGgCCGCCGgCCAgCCGGUagcgCAGa -3'
miRNA:   3'- -GGCUGCgGGUGGU-GGU-GGCUAaa--GUU- -5'
28072 3' -54.9 NC_005887.1 + 6791 0.69 0.464256
Target:  5'- cCCGGCGCUCGCCGCaCAugUCGAg--CAGa -3'
miRNA:   3'- -GGCUGCGGGUGGUG-GU--GGCUaaaGUU- -5'
28072 3' -54.9 NC_005887.1 + 22785 0.69 0.484902
Target:  5'- cUCGACGCCggCGCgGCCGCUGuugUUCAc -3'
miRNA:   3'- -GGCUGCGG--GUGgUGGUGGCua-AAGUu -5'
28072 3' -54.9 NC_005887.1 + 36950 0.69 0.495388
Target:  5'- gCGcCGCCCGCCGguUCACCGGUcgCGc -3'
miRNA:   3'- gGCuGCGGGUGGU--GGUGGCUAaaGUu -5'
28072 3' -54.9 NC_005887.1 + 21648 0.69 0.50279
Target:  5'- cCCGACGCCgACCAaucugacgggcgugUCGCUGAcgUCGGg -3'
miRNA:   3'- -GGCUGCGGgUGGU--------------GGUGGCUaaAGUU- -5'
28072 3' -54.9 NC_005887.1 + 24558 0.69 0.505976
Target:  5'- gCCgGGCGCCCAUgAUCGCCGucagcUUCAc -3'
miRNA:   3'- -GG-CUGCGGGUGgUGGUGGCua---AAGUu -5'
28072 3' -54.9 NC_005887.1 + 19245 0.68 0.512376
Target:  5'- uUCGAUGCuCCACCuguaccgcuugguGCCGCCGAcgcaagaaaccgagUUUCAGc -3'
miRNA:   3'- -GGCUGCG-GGUGG-------------UGGUGGCU--------------AAAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.