miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28072 3' -54.9 NC_005887.1 + 21808 0.66 0.649631
Target:  5'- aCGACGUCCGCggCGCUGCCGGgcgCGc -3'
miRNA:   3'- gGCUGCGGGUG--GUGGUGGCUaaaGUu -5'
28072 3' -54.9 NC_005887.1 + 34235 0.68 0.51666
Target:  5'- uCCGGCGUCCcgaucuuuCCGCUGuCUGAUUUCAGc -3'
miRNA:   3'- -GGCUGCGGGu-------GGUGGU-GGCUAAAGUU- -5'
28072 3' -54.9 NC_005887.1 + 32310 0.68 0.527433
Target:  5'- gCCGGCGCgCCgcagugcguaggACCACaCGCCGAUgccggCGAa -3'
miRNA:   3'- -GGCUGCG-GG------------UGGUG-GUGGCUAaa---GUU- -5'
28072 3' -54.9 NC_005887.1 + 41291 0.68 0.54922
Target:  5'- aCgGGCGCgCUGCUGCCGCCGGg--CAAg -3'
miRNA:   3'- -GgCUGCG-GGUGGUGGUGGCUaaaGUU- -5'
28072 3' -54.9 NC_005887.1 + 40398 0.67 0.58239
Target:  5'- gUGAUGCCCGgCACgGCCGAcgugccggUCGAa -3'
miRNA:   3'- gGCUGCGGGUgGUGgUGGCUaa------AGUU- -5'
28072 3' -54.9 NC_005887.1 + 18910 0.67 0.627173
Target:  5'- aCCGGCaGCCCGCagCGCuCACCGAa----- -3'
miRNA:   3'- -GGCUG-CGGGUG--GUG-GUGGCUaaaguu -5'
28072 3' -54.9 NC_005887.1 + 13247 0.66 0.638404
Target:  5'- -aGACGCUgACCGCCGUCGAU-UCGu -3'
miRNA:   3'- ggCUGCGGgUGGUGGUGGCUAaAGUu -5'
28072 3' -54.9 NC_005887.1 + 9686 0.66 0.649631
Target:  5'- -gGACGCCgACCAgCagACCGAUgacUCAGc -3'
miRNA:   3'- ggCUGCGGgUGGUgG--UGGCUAa--AGUU- -5'
28072 3' -54.9 NC_005887.1 + 21313 0.66 0.649631
Target:  5'- aCGggcACGCCCACCG-CGCCGAccgCAu -3'
miRNA:   3'- gGC---UGCGGGUGGUgGUGGCUaaaGUu -5'
28072 3' -54.9 NC_005887.1 + 19245 0.68 0.512376
Target:  5'- uUCGAUGCuCCACCuguaccgcuugguGCCGCCGAcgcaagaaaccgagUUUCAGc -3'
miRNA:   3'- -GGCUGCG-GGUGG-------------UGGUGGCU--------------AAAGUU- -5'
28072 3' -54.9 NC_005887.1 + 24558 0.69 0.505976
Target:  5'- gCCgGGCGCCCAUgAUCGCCGucagcUUCAc -3'
miRNA:   3'- -GG-CUGCGGGUGgUGGUGGCua---AAGUu -5'
28072 3' -54.9 NC_005887.1 + 21648 0.69 0.50279
Target:  5'- cCCGACGCCgACCAaucugacgggcgugUCGCUGAcgUCGGg -3'
miRNA:   3'- -GGCUGCGGgUGGU--------------GGUGGCUaaAGUU- -5'
28072 3' -54.9 NC_005887.1 + 5576 0.72 0.310224
Target:  5'- gCCGACGCUgACCugCGCCaGUUcgUCGAg -3'
miRNA:   3'- -GGCUGCGGgUGGugGUGGcUAA--AGUU- -5'
28072 3' -54.9 NC_005887.1 + 40765 0.72 0.310224
Target:  5'- uUGGCGCgCCGCgCGCCGCCGAgccggcggUCGAg -3'
miRNA:   3'- gGCUGCG-GGUG-GUGGUGGCUaa------AGUU- -5'
28072 3' -54.9 NC_005887.1 + 10384 0.72 0.326168
Target:  5'- gCCGACGUCgACUAUCGCCGGccUCGGg -3'
miRNA:   3'- -GGCUGCGGgUGGUGGUGGCUaaAGUU- -5'
28072 3' -54.9 NC_005887.1 + 874 0.72 0.334365
Target:  5'- gCGugGCCCG-CGCCGCCGGacgagUCAGg -3'
miRNA:   3'- gGCugCGGGUgGUGGUGGCUaa---AGUU- -5'
28072 3' -54.9 NC_005887.1 + 5151 0.71 0.386666
Target:  5'- cCCGACGUCgGCgCGCCGCUGAUg---- -3'
miRNA:   3'- -GGCUGCGGgUG-GUGGUGGCUAaaguu -5'
28072 3' -54.9 NC_005887.1 + 39711 0.71 0.395891
Target:  5'- gCGAgUGCCCGCCGCCACC----UCAu -3'
miRNA:   3'- gGCU-GCGGGUGGUGGUGGcuaaAGUu -5'
28072 3' -54.9 NC_005887.1 + 25019 0.69 0.464256
Target:  5'- gCCGGCGgCCGCCGgCCAgCCGGUagcgCAGa -3'
miRNA:   3'- -GGCUGCgGGUGGU-GGU-GGCUAaa--GUU- -5'
28072 3' -54.9 NC_005887.1 + 22785 0.69 0.484902
Target:  5'- cUCGACGCCggCGCgGCCGCUGuugUUCAc -3'
miRNA:   3'- -GGCUGCGG--GUGgUGGUGGCua-AAGUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.