miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28072 3' -54.9 NC_005887.1 + 874 0.72 0.334365
Target:  5'- gCGugGCCCG-CGCCGCCGGacgagUCAGg -3'
miRNA:   3'- gGCugCGGGUgGUGGUGGCUaa---AGUU- -5'
28072 3' -54.9 NC_005887.1 + 4017 0.66 0.65972
Target:  5'- aUCGAaaCCCACCACCuuccugaGCCGGUgaUCGAc -3'
miRNA:   3'- -GGCUgcGGGUGGUGG-------UGGCUAa-AGUU- -5'
28072 3' -54.9 NC_005887.1 + 5151 0.71 0.386666
Target:  5'- cCCGACGUCgGCgCGCCGCUGAUg---- -3'
miRNA:   3'- -GGCUGCGGgUG-GUGGUGGCUAaaguu -5'
28072 3' -54.9 NC_005887.1 + 5576 0.72 0.310224
Target:  5'- gCCGACGCUgACCugCGCCaGUUcgUCGAg -3'
miRNA:   3'- -GGCUGCGGgUGGugGUGGcUAA--AGUU- -5'
28072 3' -54.9 NC_005887.1 + 6791 0.69 0.464256
Target:  5'- cCCGGCGCUCGCCGCaCAugUCGAg--CAGa -3'
miRNA:   3'- -GGCUGCGGGUGGUG-GU--GGCUaaaGUU- -5'
28072 3' -54.9 NC_005887.1 + 7016 0.66 0.672022
Target:  5'- cUCGugGCCgGCCGCCGCgGcgcgCGg -3'
miRNA:   3'- -GGCugCGGgUGGUGGUGgCuaaaGUu -5'
28072 3' -54.9 NC_005887.1 + 9686 0.66 0.649631
Target:  5'- -gGACGCCgACCAgCagACCGAUgacUCAGc -3'
miRNA:   3'- ggCUGCGGgUGGUgG--UGGCUAa--AGUU- -5'
28072 3' -54.9 NC_005887.1 + 10384 0.72 0.326168
Target:  5'- gCCGACGUCgACUAUCGCCGGccUCGGg -3'
miRNA:   3'- -GGCUGCGGgUGGUGGUGGCUaaAGUU- -5'
28072 3' -54.9 NC_005887.1 + 10473 1.08 0.000935
Target:  5'- gCCGACGCCCACCACCACCGAUUUCAAg -3'
miRNA:   3'- -GGCUGCGGGUGGUGGUGGCUAAAGUU- -5'
28072 3' -54.9 NC_005887.1 + 11405 0.69 0.454107
Target:  5'- gCgGGCGCCgaCAUCACCGCCGAgcgCGc -3'
miRNA:   3'- -GgCUGCGG--GUGGUGGUGGCUaaaGUu -5'
28072 3' -54.9 NC_005887.1 + 12848 0.66 0.638404
Target:  5'- aCG-CGCCCGCCgucgagGCCGCCGGc----- -3'
miRNA:   3'- gGCuGCGGGUGG------UGGUGGCUaaaguu -5'
28072 3' -54.9 NC_005887.1 + 13247 0.66 0.638404
Target:  5'- -aGACGCUgACCGCCGUCGAU-UCGu -3'
miRNA:   3'- ggCUGCGGgUGGUGGUGGCUAaAGUu -5'
28072 3' -54.9 NC_005887.1 + 13470 0.66 0.638404
Target:  5'- gUCGACGgUCGCUACC-CCGAUUa--- -3'
miRNA:   3'- -GGCUGCgGGUGGUGGuGGCUAAaguu -5'
28072 3' -54.9 NC_005887.1 + 16150 0.68 0.51666
Target:  5'- gCCGGC-CaCCGCCGCC-CCGuUUUCAu -3'
miRNA:   3'- -GGCUGcG-GGUGGUGGuGGCuAAAGUu -5'
28072 3' -54.9 NC_005887.1 + 16351 0.67 0.592427
Target:  5'- cCCGACGCCgcccgugaagcugUACCGCguCGCCGAagugUCGAa -3'
miRNA:   3'- -GGCUGCGG-------------GUGGUG--GUGGCUaa--AGUU- -5'
28072 3' -54.9 NC_005887.1 + 16400 0.67 0.604732
Target:  5'- cUCGGCGUCUGCCggGCCACCGucuaCAAu -3'
miRNA:   3'- -GGCUGCGGGUGG--UGGUGGCuaaaGUU- -5'
28072 3' -54.9 NC_005887.1 + 17332 0.67 0.571279
Target:  5'- aCCGGCugGCCgGCgGCCGCCGGcg-CGAg -3'
miRNA:   3'- -GGCUG--CGGgUGgUGGUGGCUaaaGUU- -5'
28072 3' -54.9 NC_005887.1 + 18910 0.67 0.627173
Target:  5'- aCCGGCaGCCCGCagCGCuCACCGAa----- -3'
miRNA:   3'- -GGCUG-CGGGUG--GUG-GUGGCUaaaguu -5'
28072 3' -54.9 NC_005887.1 + 19110 0.68 0.560219
Target:  5'- gCG-CGCCgACCGCCGCCGc--UCGc -3'
miRNA:   3'- gGCuGCGGgUGGUGGUGGCuaaAGUu -5'
28072 3' -54.9 NC_005887.1 + 19245 0.68 0.512376
Target:  5'- uUCGAUGCuCCACCuguaccgcuugguGCCGCCGAcgcaagaaaccgagUUUCAGc -3'
miRNA:   3'- -GGCUGCG-GGUGG-------------UGGUGGCU--------------AAAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.