miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28073 3' -63.8 NC_005887.1 + 10055 1.1 0.000117
Target:  5'- gCGCGCCGGCUGGCCCGACGAUCGCCCc -3'
miRNA:   3'- -GCGCGGCCGACCGGGCUGCUAGCGGG- -5'
28073 3' -63.8 NC_005887.1 + 25070 0.83 0.014825
Target:  5'- gCGCGCgCGGCgccGCCCGACGucUCGCCCg -3'
miRNA:   3'- -GCGCG-GCCGac-CGGGCUGCu-AGCGGG- -5'
28073 3' -63.8 NC_005887.1 + 8684 0.78 0.032648
Target:  5'- uCGCGaCGGUgcagGGCCCGGCGAUcCGCCg -3'
miRNA:   3'- -GCGCgGCCGa---CCGGGCUGCUA-GCGGg -5'
28073 3' -63.8 NC_005887.1 + 34348 0.77 0.043187
Target:  5'- gGCGCCGGCcacGGCUggaGACGAgCGCCCc -3'
miRNA:   3'- gCGCGGCCGa--CCGGg--CUGCUaGCGGG- -5'
28073 3' -63.8 NC_005887.1 + 27718 0.76 0.051038
Target:  5'- cCGCGCCGGCUGccgugagcgcGCCCucGACGG-CGCCg -3'
miRNA:   3'- -GCGCGGCCGAC----------CGGG--CUGCUaGCGGg -5'
28073 3' -63.8 NC_005887.1 + 28327 0.76 0.053952
Target:  5'- uGCGCCGGCgGcGCgCCGGCGGUUGCg- -3'
miRNA:   3'- gCGCGGCCGaC-CG-GGCUGCUAGCGgg -5'
28073 3' -63.8 NC_005887.1 + 4406 0.76 0.055469
Target:  5'- gCGCGCCGGCgaaGGCgCGGCGAUC-CUg -3'
miRNA:   3'- -GCGCGGCCGa--CCGgGCUGCUAGcGGg -5'
28073 3' -63.8 NC_005887.1 + 21796 0.76 0.056087
Target:  5'- gGCGauauugcaaccgaauCCGGCUGcGCCCGACGcAagGCCCa -3'
miRNA:   3'- gCGC---------------GGCCGAC-CGGGCUGC-UagCGGG- -5'
28073 3' -63.8 NC_005887.1 + 24250 0.75 0.065475
Target:  5'- aCGUGCCGGCagcaGCCaCGGCGAgUCGCCg -3'
miRNA:   3'- -GCGCGGCCGac--CGG-GCUGCU-AGCGGg -5'
28073 3' -63.8 NC_005887.1 + 14708 0.74 0.071111
Target:  5'- gCGgGCgGGCcgGGCgCGGCGAUCGCgCa -3'
miRNA:   3'- -GCgCGgCCGa-CCGgGCUGCUAGCGgG- -5'
28073 3' -63.8 NC_005887.1 + 40696 0.74 0.071897
Target:  5'- gCGCGCaCGGCUGGCaggagCCGAUcgaagacgacuucgaGGUCGCCg -3'
miRNA:   3'- -GCGCG-GCCGACCG-----GGCUG---------------CUAGCGGg -5'
28073 3' -63.8 NC_005887.1 + 1594 0.74 0.073091
Target:  5'- gGCGCgCGGC-GcGCCaaCGGCGAUCGCCUc -3'
miRNA:   3'- gCGCG-GCCGaC-CGG--GCUGCUAGCGGG- -5'
28073 3' -63.8 NC_005887.1 + 17326 0.73 0.079355
Target:  5'- uGCGCuacCGGCUGG-CCGGCGGcCGCCg -3'
miRNA:   3'- gCGCG---GCCGACCgGGCUGCUaGCGGg -5'
28073 3' -63.8 NC_005887.1 + 3767 0.73 0.079355
Target:  5'- uCGCGUCGuaCUGGCUCGACGAggGCCg -3'
miRNA:   3'- -GCGCGGCc-GACCGGGCUGCUagCGGg -5'
28073 3' -63.8 NC_005887.1 + 37333 0.73 0.079355
Target:  5'- aGCGCCGGCacUGGCau--CGGUCGCCg -3'
miRNA:   3'- gCGCGGCCG--ACCGggcuGCUAGCGGg -5'
28073 3' -63.8 NC_005887.1 + 25834 0.73 0.085661
Target:  5'- gGCGCCGGCggcgacgcgaucGGCCUG-CGAcaUCGCCg -3'
miRNA:   3'- gCGCGGCCGa-----------CCGGGCuGCU--AGCGGg -5'
28073 3' -63.8 NC_005887.1 + 40043 0.73 0.090948
Target:  5'- gGCgGCCGGCcuacGCCCGAuaccguucCGAUCGUCCg -3'
miRNA:   3'- gCG-CGGCCGac--CGGGCU--------GCUAGCGGG- -5'
28073 3' -63.8 NC_005887.1 + 36039 0.73 0.090948
Target:  5'- gGCGCCGGCgaggcgcaaGGCCuCGACGcgcUCGCgCa -3'
miRNA:   3'- gCGCGGCCGa--------CCGG-GCUGCu--AGCGgG- -5'
28073 3' -63.8 NC_005887.1 + 11218 0.73 0.093452
Target:  5'- uGCGCaCGGCcuGCCCGGCaagcUCGCCCu -3'
miRNA:   3'- gCGCG-GCCGacCGGGCUGcu--AGCGGG- -5'
28073 3' -63.8 NC_005887.1 + 4248 0.72 0.099732
Target:  5'- aCGCucgGCCGcacgcagucugaacuGCUcGGCCCGAUGAUCGCgCg -3'
miRNA:   3'- -GCG---CGGC---------------CGA-CCGGGCUGCUAGCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.