miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28073 3' -63.8 NC_005887.1 + 36128 0.7 0.155219
Target:  5'- aCGU-CCGGCgUGGCUCGGUGAUCGUCUc -3'
miRNA:   3'- -GCGcGGCCG-ACCGGGCUGCUAGCGGG- -5'
28073 3' -63.8 NC_005887.1 + 40966 0.71 0.115963
Target:  5'- cCGCuUCGGCgcgGGCCUGAUGuacgUGCCCg -3'
miRNA:   3'- -GCGcGGCCGa--CCGGGCUGCua--GCGGG- -5'
28073 3' -63.8 NC_005887.1 + 29737 0.71 0.128007
Target:  5'- aCGCGCCGcGCgUGcacggucuuGCCCGGCGAgcugaucgcgaggaUCGCCg -3'
miRNA:   3'- -GCGCGGC-CG-AC---------CGGGCUGCU--------------AGCGGg -5'
28073 3' -63.8 NC_005887.1 + 22205 0.71 0.132507
Target:  5'- gCGCGgCGGUcgcauauuacggUGGCCCGcUGAUCGUCg -3'
miRNA:   3'- -GCGCgGCCG------------ACCGGGCuGCUAGCGGg -5'
28073 3' -63.8 NC_005887.1 + 27769 0.7 0.142698
Target:  5'- gCGCGCCGGCgaGGUagagcgccaugaCGACGG-CGCCg -3'
miRNA:   3'- -GCGCGGCCGa-CCGg-----------GCUGCUaGCGGg -5'
28073 3' -63.8 NC_005887.1 + 33751 0.7 0.143075
Target:  5'- gCGCGCCGGCcuucacgagcaucUGGCgCGGCG--UGCCg -3'
miRNA:   3'- -GCGCGGCCG-------------ACCGgGCUGCuaGCGGg -5'
28073 3' -63.8 NC_005887.1 + 34472 0.7 0.143453
Target:  5'- uCGCG-CGGCUcGcGCCCGagaaGCuGUCGCCCg -3'
miRNA:   3'- -GCGCgGCCGA-C-CGGGC----UGcUAGCGGG- -5'
28073 3' -63.8 NC_005887.1 + 39535 0.7 0.148839
Target:  5'- gGCGCCGGCUcuguaccccaauccGCgCGACGggCuGCCCg -3'
miRNA:   3'- gCGCGGCCGAc-------------CGgGCUGCuaG-CGGG- -5'
28073 3' -63.8 NC_005887.1 + 18380 0.7 0.154004
Target:  5'- gCGCGCCGGCgcucgcgaacccgaUGGCCUacgccGCGG-CGCUCg -3'
miRNA:   3'- -GCGCGGCCG--------------ACCGGGc----UGCUaGCGGG- -5'
28073 3' -63.8 NC_005887.1 + 21069 0.72 0.106983
Target:  5'- gGCGCCGGUgugggguggcguUGGCuuGaacgguaucggcGCGGUCGCCg -3'
miRNA:   3'- gCGCGGCCG------------ACCGggC------------UGCUAGCGGg -5'
28073 3' -63.8 NC_005887.1 + 4248 0.72 0.099732
Target:  5'- aCGCucgGCCGcacgcagucugaacuGCUcGGCCCGAUGAUCGCgCg -3'
miRNA:   3'- -GCG---CGGC---------------CGA-CCGGGCUGCUAGCGgG- -5'
28073 3' -63.8 NC_005887.1 + 40043 0.73 0.090948
Target:  5'- gGCgGCCGGCcuacGCCCGAuaccguucCGAUCGUCCg -3'
miRNA:   3'- gCG-CGGCCGac--CGGGCU--------GCUAGCGGG- -5'
28073 3' -63.8 NC_005887.1 + 34348 0.77 0.043187
Target:  5'- gGCGCCGGCcacGGCUggaGACGAgCGCCCc -3'
miRNA:   3'- gCGCGGCCGa--CCGGg--CUGCUaGCGGG- -5'
28073 3' -63.8 NC_005887.1 + 4406 0.76 0.055469
Target:  5'- gCGCGCCGGCgaaGGCgCGGCGAUC-CUg -3'
miRNA:   3'- -GCGCGGCCGa--CCGgGCUGCUAGcGGg -5'
28073 3' -63.8 NC_005887.1 + 24250 0.75 0.065475
Target:  5'- aCGUGCCGGCagcaGCCaCGGCGAgUCGCCg -3'
miRNA:   3'- -GCGCGGCCGac--CGG-GCUGCU-AGCGGg -5'
28073 3' -63.8 NC_005887.1 + 14708 0.74 0.071111
Target:  5'- gCGgGCgGGCcgGGCgCGGCGAUCGCgCa -3'
miRNA:   3'- -GCgCGgCCGa-CCGgGCUGCUAGCGgG- -5'
28073 3' -63.8 NC_005887.1 + 40696 0.74 0.071897
Target:  5'- gCGCGCaCGGCUGGCaggagCCGAUcgaagacgacuucgaGGUCGCCg -3'
miRNA:   3'- -GCGCG-GCCGACCG-----GGCUG---------------CUAGCGGg -5'
28073 3' -63.8 NC_005887.1 + 3767 0.73 0.079355
Target:  5'- uCGCGUCGuaCUGGCUCGACGAggGCCg -3'
miRNA:   3'- -GCGCGGCc-GACCGGGCUGCUagCGGg -5'
28073 3' -63.8 NC_005887.1 + 37333 0.73 0.079355
Target:  5'- aGCGCCGGCacUGGCau--CGGUCGCCg -3'
miRNA:   3'- gCGCGGCCG--ACCGggcuGCUAGCGGg -5'
28073 3' -63.8 NC_005887.1 + 36039 0.73 0.090948
Target:  5'- gGCGCCGGCgaggcgcaaGGCCuCGACGcgcUCGCgCa -3'
miRNA:   3'- gCGCGGCCGa--------CCGG-GCUGCu--AGCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.