miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28073 3' -63.8 NC_005887.1 + 748 0.67 0.239608
Target:  5'- cCGCGCCGGCcgccgcaccUGGgCCGcCGcUgGCCg -3'
miRNA:   3'- -GCGCGGCCG---------ACCgGGCuGCuAgCGGg -5'
28073 3' -63.8 NC_005887.1 + 797 0.66 0.257988
Target:  5'- gGCGCUGGCUGacuucgcguGCgCGcCGAgCGCCUc -3'
miRNA:   3'- gCGCGGCCGAC---------CGgGCuGCUaGCGGG- -5'
28073 3' -63.8 NC_005887.1 + 1594 0.74 0.073091
Target:  5'- gGCGCgCGGC-GcGCCaaCGGCGAUCGCCUc -3'
miRNA:   3'- gCGCG-GCCGaC-CGG--GCUGCUAGCGGG- -5'
28073 3' -63.8 NC_005887.1 + 2404 0.68 0.186127
Target:  5'- gCGUGCC-GCUGGCUucgaGGCGAa-GCCCg -3'
miRNA:   3'- -GCGCGGcCGACCGGg---CUGCUagCGGG- -5'
28073 3' -63.8 NC_005887.1 + 3767 0.73 0.079355
Target:  5'- uCGCGUCGuaCUGGCUCGACGAggGCCg -3'
miRNA:   3'- -GCGCGGCc-GACCGGGCUGCUagCGGg -5'
28073 3' -63.8 NC_005887.1 + 4248 0.72 0.099732
Target:  5'- aCGCucgGCCGcacgcagucugaacuGCUcGGCCCGAUGAUCGCgCg -3'
miRNA:   3'- -GCG---CGGC---------------CGA-CCGGGCUGCUAGCGgG- -5'
28073 3' -63.8 NC_005887.1 + 4406 0.76 0.055469
Target:  5'- gCGCGCCGGCgaaGGCgCGGCGAUC-CUg -3'
miRNA:   3'- -GCGCGGCCGa--CCGgGCUGCUAGcGGg -5'
28073 3' -63.8 NC_005887.1 + 4679 0.69 0.159332
Target:  5'- uGCGCagaCGGCgagGGUCUGAUGggCGCgCCg -3'
miRNA:   3'- gCGCG---GCCGa--CCGGGCUGCuaGCG-GG- -5'
28073 3' -63.8 NC_005887.1 + 6771 0.66 0.29116
Target:  5'- uGCaagGCCaaGGCcgUGuGCCCGGCGcUCGCCg -3'
miRNA:   3'- gCG---CGG--CCG--AC-CGGGCUGCuAGCGGg -5'
28073 3' -63.8 NC_005887.1 + 7386 0.68 0.211416
Target:  5'- cCGCGuUCaGCUcGCCgaCGACGAUCGCCa -3'
miRNA:   3'- -GCGC-GGcCGAcCGG--GCUGCUAGCGGg -5'
28073 3' -63.8 NC_005887.1 + 8684 0.78 0.032648
Target:  5'- uCGCGaCGGUgcagGGCCCGGCGAUcCGCCg -3'
miRNA:   3'- -GCGCgGCCGa---CCGGGCUGCUA-GCGGg -5'
28073 3' -63.8 NC_005887.1 + 8861 0.66 0.29116
Target:  5'- -aCGCCGGC-GcGCCCGucgaGAUCGCg- -3'
miRNA:   3'- gcGCGGCCGaC-CGGGCug--CUAGCGgg -5'
28073 3' -63.8 NC_005887.1 + 9076 0.69 0.17678
Target:  5'- uGCGCCGGCUgcGGCggGACGAaguuUCGCg- -3'
miRNA:   3'- gCGCGGCCGA--CCGggCUGCU----AGCGgg -5'
28073 3' -63.8 NC_005887.1 + 9271 0.66 0.257988
Target:  5'- uGUGCaCGGCggucGGCaCGGCGA-CGCCg -3'
miRNA:   3'- gCGCG-GCCGa---CCGgGCUGCUaGCGGg -5'
28073 3' -63.8 NC_005887.1 + 10055 1.1 0.000117
Target:  5'- gCGCGCCGGCUGGCCCGACGAUCGCCCc -3'
miRNA:   3'- -GCGCGGCCGACCGGGCUGCUAGCGGG- -5'
28073 3' -63.8 NC_005887.1 + 10224 0.66 0.257988
Target:  5'- cCGCGCCGGaCggcGcGUCUGAUGAccugugggugaUCGUCCg -3'
miRNA:   3'- -GCGCGGCC-Ga--C-CGGGCUGCU-----------AGCGGG- -5'
28073 3' -63.8 NC_005887.1 + 10475 0.66 0.287009
Target:  5'- aCG-GCCGGCgcgaucacgcucgacUGGUCCGcauCGAUCGUgCa -3'
miRNA:   3'- -GCgCGGCCG---------------ACCGGGCu--GCUAGCGgG- -5'
28073 3' -63.8 NC_005887.1 + 11218 0.73 0.093452
Target:  5'- uGCGCaCGGCcuGCCCGGCaagcUCGCCCu -3'
miRNA:   3'- gCGCG-GCCGacCGGGCUGcu--AGCGGG- -5'
28073 3' -63.8 NC_005887.1 + 11397 0.67 0.227972
Target:  5'- aGCGCUGGC-GG-CCGGCGc-CGCCa -3'
miRNA:   3'- gCGCGGCCGaCCgGGCUGCuaGCGGg -5'
28073 3' -63.8 NC_005887.1 + 12284 0.67 0.233729
Target:  5'- uGCGCCaGCUcGGCaaggugauggagCUGGCGcUCGCCUa -3'
miRNA:   3'- gCGCGGcCGA-CCG------------GGCUGCuAGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.