miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28074 3' -50.3 NC_005887.1 + 9876 1.1 0.002137
Target:  5'- cUACUACAACGAGAUCGAUCCGCACGCc -3'
miRNA:   3'- -AUGAUGUUGCUCUAGCUAGGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 4865 0.79 0.23355
Target:  5'- --gUGCAGCGcacGAUCGAUCCGCuCGCg -3'
miRNA:   3'- augAUGUUGCu--CUAGCUAGGCGuGCG- -5'
28074 3' -50.3 NC_005887.1 + 11792 0.76 0.365268
Target:  5'- cGCUGCucgGCGGcGUCGGUUCGUACGCu -3'
miRNA:   3'- aUGAUGu--UGCUcUAGCUAGGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 15838 0.75 0.412658
Target:  5'- cGCUugcGCGGCGcGAUCGAgggaaacgcCCGCGCGCa -3'
miRNA:   3'- aUGA---UGUUGCuCUAGCUa--------GGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 14916 0.74 0.463661
Target:  5'- cGCUGCAAucacuCGcGAUCGAcgcacgCCGCGCGCu -3'
miRNA:   3'- aUGAUGUU-----GCuCUAGCUa-----GGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 22968 0.73 0.540124
Target:  5'- aGCggAUAGCGAaucgaguuGAUCGucgCCGCACGCg -3'
miRNA:   3'- aUGa-UGUUGCU--------CUAGCua-GGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 16427 0.73 0.540124
Target:  5'- gGCcgagauCGACGGGAUCGAgaaCCGCguGCGCg -3'
miRNA:   3'- aUGau----GUUGCUCUAGCUa--GGCG--UGCG- -5'
28074 3' -50.3 NC_005887.1 + 3344 0.72 0.562792
Target:  5'- cGCUG-AACGAGAUCGcGUCCGUcaagGCGUa -3'
miRNA:   3'- aUGAUgUUGCUCUAGC-UAGGCG----UGCG- -5'
28074 3' -50.3 NC_005887.1 + 18932 0.72 0.574224
Target:  5'- gGCUGCGACGAgcuGAUCGA--CGCGCuGCu -3'
miRNA:   3'- aUGAUGUUGCU---CUAGCUagGCGUG-CG- -5'
28074 3' -50.3 NC_005887.1 + 38395 0.72 0.585708
Target:  5'- aGCaACGGCG-GGUCGAcgagcuUCUGCGCGCc -3'
miRNA:   3'- aUGaUGUUGCuCUAGCU------AGGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 25887 0.72 0.585708
Target:  5'- -cCUGCcGCGcGGUCGAgcgcaugcCCGCGCGCa -3'
miRNA:   3'- auGAUGuUGCuCUAGCUa-------GGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 6751 0.71 0.631973
Target:  5'- gACgGCAACGGcGGUCGGauggaagguUaCCGCACGCa -3'
miRNA:   3'- aUGaUGUUGCU-CUAGCU---------A-GGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 5366 0.71 0.65515
Target:  5'- gUGCUcgcCGGCGAGcUCGAcCCGCGCGa -3'
miRNA:   3'- -AUGAu--GUUGCUCuAGCUaGGCGUGCg -5'
28074 3' -50.3 NC_005887.1 + 27863 0.71 0.65515
Target:  5'- cACcGCGGCGGGcaCGAUCUGCGCGa -3'
miRNA:   3'- aUGaUGUUGCUCuaGCUAGGCGUGCg -5'
28074 3' -50.3 NC_005887.1 + 17270 0.71 0.65515
Target:  5'- --gUGCcgGGCGAGAcgUCGGgcggcgCCGCGCGCg -3'
miRNA:   3'- augAUG--UUGCUCU--AGCUa-----GGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 291 0.71 0.65515
Target:  5'- aACUGCGuggcgugaucaGCGAGGccgCGGUgCGCGCGUa -3'
miRNA:   3'- aUGAUGU-----------UGCUCUa--GCUAgGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 14653 0.7 0.665554
Target:  5'- gUGCUACGcgGCGAGGUacggcacgUGAUgcagacgaucaagCCGCGCGCg -3'
miRNA:   3'- -AUGAUGU--UGCUCUA--------GCUA-------------GGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 27944 0.7 0.678232
Target:  5'- cGCUugAACGugucggacAGGUCGua-CGCGCGCg -3'
miRNA:   3'- aUGAugUUGC--------UCUAGCuagGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 24604 0.7 0.678232
Target:  5'- ---cGCGGCGAuGAUCuugcggCCGCACGCg -3'
miRNA:   3'- augaUGUUGCU-CUAGcua---GGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 34244 0.7 0.678232
Target:  5'- gGCgccuCGGCGAGcgCGGcgagCUGCGCGCg -3'
miRNA:   3'- aUGau--GUUGCUCuaGCUa---GGCGUGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.