Results 1 - 20 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28074 | 3' | -50.3 | NC_005887.1 | + | 9876 | 1.1 | 0.002137 |
Target: 5'- cUACUACAACGAGAUCGAUCCGCACGCc -3' miRNA: 3'- -AUGAUGUUGCUCUAGCUAGGCGUGCG- -5' |
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28074 | 3' | -50.3 | NC_005887.1 | + | 4865 | 0.79 | 0.23355 |
Target: 5'- --gUGCAGCGcacGAUCGAUCCGCuCGCg -3' miRNA: 3'- augAUGUUGCu--CUAGCUAGGCGuGCG- -5' |
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28074 | 3' | -50.3 | NC_005887.1 | + | 11792 | 0.76 | 0.365268 |
Target: 5'- cGCUGCucgGCGGcGUCGGUUCGUACGCu -3' miRNA: 3'- aUGAUGu--UGCUcUAGCUAGGCGUGCG- -5' |
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28074 | 3' | -50.3 | NC_005887.1 | + | 15838 | 0.75 | 0.412658 |
Target: 5'- cGCUugcGCGGCGcGAUCGAgggaaacgcCCGCGCGCa -3' miRNA: 3'- aUGA---UGUUGCuCUAGCUa--------GGCGUGCG- -5' |
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28074 | 3' | -50.3 | NC_005887.1 | + | 14916 | 0.74 | 0.463661 |
Target: 5'- cGCUGCAAucacuCGcGAUCGAcgcacgCCGCGCGCu -3' miRNA: 3'- aUGAUGUU-----GCuCUAGCUa-----GGCGUGCG- -5' |
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28074 | 3' | -50.3 | NC_005887.1 | + | 22968 | 0.73 | 0.540124 |
Target: 5'- aGCggAUAGCGAaucgaguuGAUCGucgCCGCACGCg -3' miRNA: 3'- aUGa-UGUUGCU--------CUAGCua-GGCGUGCG- -5' |
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28074 | 3' | -50.3 | NC_005887.1 | + | 16427 | 0.73 | 0.540124 |
Target: 5'- gGCcgagauCGACGGGAUCGAgaaCCGCguGCGCg -3' miRNA: 3'- aUGau----GUUGCUCUAGCUa--GGCG--UGCG- -5' |
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28074 | 3' | -50.3 | NC_005887.1 | + | 3344 | 0.72 | 0.562792 |
Target: 5'- cGCUG-AACGAGAUCGcGUCCGUcaagGCGUa -3' miRNA: 3'- aUGAUgUUGCUCUAGC-UAGGCG----UGCG- -5' |
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28074 | 3' | -50.3 | NC_005887.1 | + | 18932 | 0.72 | 0.574224 |
Target: 5'- gGCUGCGACGAgcuGAUCGA--CGCGCuGCu -3' miRNA: 3'- aUGAUGUUGCU---CUAGCUagGCGUG-CG- -5' |
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28074 | 3' | -50.3 | NC_005887.1 | + | 38395 | 0.72 | 0.585708 |
Target: 5'- aGCaACGGCG-GGUCGAcgagcuUCUGCGCGCc -3' miRNA: 3'- aUGaUGUUGCuCUAGCU------AGGCGUGCG- -5' |
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28074 | 3' | -50.3 | NC_005887.1 | + | 25887 | 0.72 | 0.585708 |
Target: 5'- -cCUGCcGCGcGGUCGAgcgcaugcCCGCGCGCa -3' miRNA: 3'- auGAUGuUGCuCUAGCUa-------GGCGUGCG- -5' |
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28074 | 3' | -50.3 | NC_005887.1 | + | 6751 | 0.71 | 0.631973 |
Target: 5'- gACgGCAACGGcGGUCGGauggaagguUaCCGCACGCa -3' miRNA: 3'- aUGaUGUUGCU-CUAGCU---------A-GGCGUGCG- -5' |
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28074 | 3' | -50.3 | NC_005887.1 | + | 5366 | 0.71 | 0.65515 |
Target: 5'- gUGCUcgcCGGCGAGcUCGAcCCGCGCGa -3' miRNA: 3'- -AUGAu--GUUGCUCuAGCUaGGCGUGCg -5' |
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28074 | 3' | -50.3 | NC_005887.1 | + | 27863 | 0.71 | 0.65515 |
Target: 5'- cACcGCGGCGGGcaCGAUCUGCGCGa -3' miRNA: 3'- aUGaUGUUGCUCuaGCUAGGCGUGCg -5' |
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28074 | 3' | -50.3 | NC_005887.1 | + | 17270 | 0.71 | 0.65515 |
Target: 5'- --gUGCcgGGCGAGAcgUCGGgcggcgCCGCGCGCg -3' miRNA: 3'- augAUG--UUGCUCU--AGCUa-----GGCGUGCG- -5' |
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28074 | 3' | -50.3 | NC_005887.1 | + | 291 | 0.71 | 0.65515 |
Target: 5'- aACUGCGuggcgugaucaGCGAGGccgCGGUgCGCGCGUa -3' miRNA: 3'- aUGAUGU-----------UGCUCUa--GCUAgGCGUGCG- -5' |
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28074 | 3' | -50.3 | NC_005887.1 | + | 14653 | 0.7 | 0.665554 |
Target: 5'- gUGCUACGcgGCGAGGUacggcacgUGAUgcagacgaucaagCCGCGCGCg -3' miRNA: 3'- -AUGAUGU--UGCUCUA--------GCUA-------------GGCGUGCG- -5' |
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28074 | 3' | -50.3 | NC_005887.1 | + | 27944 | 0.7 | 0.678232 |
Target: 5'- cGCUugAACGugucggacAGGUCGua-CGCGCGCg -3' miRNA: 3'- aUGAugUUGC--------UCUAGCuagGCGUGCG- -5' |
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28074 | 3' | -50.3 | NC_005887.1 | + | 24604 | 0.7 | 0.678232 |
Target: 5'- ---cGCGGCGAuGAUCuugcggCCGCACGCg -3' miRNA: 3'- augaUGUUGCU-CUAGcua---GGCGUGCG- -5' |
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28074 | 3' | -50.3 | NC_005887.1 | + | 34244 | 0.7 | 0.678232 |
Target: 5'- gGCgccuCGGCGAGcgCGGcgagCUGCGCGCg -3' miRNA: 3'- aUGau--GUUGCUCuaGCUa---GGCGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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