miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28074 3' -50.3 NC_005887.1 + 16926 0.69 0.756802
Target:  5'- gGCaagACGACGGGcgCGAUgCGUgaGCGCu -3'
miRNA:   3'- aUGa--UGUUGCUCuaGCUAgGCG--UGCG- -5'
28074 3' -50.3 NC_005887.1 + 16988 0.7 0.70112
Target:  5'- gACUACGGCuacgugcCGAUCCGcCACGCg -3'
miRNA:   3'- aUGAUGUUGcucua--GCUAGGC-GUGCG- -5'
28074 3' -50.3 NC_005887.1 + 40129 0.7 0.70112
Target:  5'- -cCUACAGCGugcGGUgCGcgCUGCGCGCc -3'
miRNA:   3'- auGAUGUUGCu--CUA-GCuaGGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 30774 0.7 0.712458
Target:  5'- gUGCgcGCGGCGAGuUCcuUCUGCGCGCg -3'
miRNA:   3'- -AUGa-UGUUGCUCuAGcuAGGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 3701 0.7 0.712458
Target:  5'- -uCUACcACGccGUCGAgCCGCGCGCc -3'
miRNA:   3'- auGAUGuUGCucUAGCUaGGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 617 0.69 0.744796
Target:  5'- uUGCUGCAA--AGAUCGAagCCGCgaugaaaGCGCg -3'
miRNA:   3'- -AUGAUGUUgcUCUAGCUa-GGCG-------UGCG- -5'
28074 3' -50.3 NC_005887.1 + 4233 0.69 0.745894
Target:  5'- gUGCUGCucGCGccGAcgcUCGG-CCGCACGCa -3'
miRNA:   3'- -AUGAUGu-UGCu-CU---AGCUaGGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 39909 0.69 0.745894
Target:  5'- aGCaUACGgugcGCGcAGAUCGAgCCGgGCGCg -3'
miRNA:   3'- aUG-AUGU----UGC-UCUAGCUaGGCgUGCG- -5'
28074 3' -50.3 NC_005887.1 + 8868 0.69 0.756802
Target:  5'- cGCgccCGuCGAGAUCGcgacgCCGUACGCg -3'
miRNA:   3'- aUGau-GUuGCUCUAGCua---GGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 11693 0.7 0.688562
Target:  5'- cGCU-CGACGAucaggcgucgcaaGAUCGcuucgCCGCGCGCa -3'
miRNA:   3'- aUGAuGUUGCU-------------CUAGCua---GGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 41055 0.7 0.678232
Target:  5'- aGCUcgagaACAugGcgaaGGAcaCGAUCCGCGCGCu -3'
miRNA:   3'- aUGA-----UGUugC----UCUa-GCUAGGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 24604 0.7 0.678232
Target:  5'- ---cGCGGCGAuGAUCuugcggCCGCACGCg -3'
miRNA:   3'- augaUGUUGCU-CUAGcua---GGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 11792 0.76 0.365268
Target:  5'- cGCUGCucgGCGGcGUCGGUUCGUACGCu -3'
miRNA:   3'- aUGAUGu--UGCUcUAGCUAGGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 15838 0.75 0.412658
Target:  5'- cGCUugcGCGGCGcGAUCGAgggaaacgcCCGCGCGCa -3'
miRNA:   3'- aUGA---UGUUGCuCUAGCUa--------GGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 14916 0.74 0.463661
Target:  5'- cGCUGCAAucacuCGcGAUCGAcgcacgCCGCGCGCu -3'
miRNA:   3'- aUGAUGUU-----GCuCUAGCUa-----GGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 16427 0.73 0.540124
Target:  5'- gGCcgagauCGACGGGAUCGAgaaCCGCguGCGCg -3'
miRNA:   3'- aUGau----GUUGCUCUAGCUa--GGCG--UGCG- -5'
28074 3' -50.3 NC_005887.1 + 3344 0.72 0.562792
Target:  5'- cGCUG-AACGAGAUCGcGUCCGUcaagGCGUa -3'
miRNA:   3'- aUGAUgUUGCUCUAGC-UAGGCG----UGCG- -5'
28074 3' -50.3 NC_005887.1 + 6751 0.71 0.631973
Target:  5'- gACgGCAACGGcGGUCGGauggaagguUaCCGCACGCa -3'
miRNA:   3'- aUGaUGUUGCU-CUAGCU---------A-GGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 291 0.71 0.65515
Target:  5'- aACUGCGuggcgugaucaGCGAGGccgCGGUgCGCGCGUa -3'
miRNA:   3'- aUGAUGU-----------UGCUCUa--GCUAgGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 17270 0.71 0.65515
Target:  5'- --gUGCcgGGCGAGAcgUCGGgcggcgCCGCGCGCg -3'
miRNA:   3'- augAUG--UUGCUCU--AGCUa-----GGCGUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.