miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28074 3' -50.3 NC_005887.1 + 291 0.71 0.65515
Target:  5'- aACUGCGuggcgugaucaGCGAGGccgCGGUgCGCGCGUa -3'
miRNA:   3'- aUGAUGU-----------UGCUCUa--GCUAgGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 374 0.69 0.767568
Target:  5'- gUGCUGCugauaGGCGAGcgCGccgCGCACGCa -3'
miRNA:   3'- -AUGAUG-----UUGCUCuaGCuagGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 500 0.67 0.828462
Target:  5'- aGCUGuucguCGACGAGuaucugGUCGAUCUGaACGCg -3'
miRNA:   3'- aUGAU-----GUUGCUC------UAGCUAGGCgUGCG- -5'
28074 3' -50.3 NC_005887.1 + 617 0.69 0.744796
Target:  5'- uUGCUGCAA--AGAUCGAagCCGCgaugaaaGCGCg -3'
miRNA:   3'- -AUGAUGUUgcUCUAGCUa-GGCG-------UGCG- -5'
28074 3' -50.3 NC_005887.1 + 901 0.66 0.881162
Target:  5'- gGCgGCcuCGGcuUCGAUCCGCGuCGCg -3'
miRNA:   3'- aUGaUGuuGCUcuAGCUAGGCGU-GCG- -5'
28074 3' -50.3 NC_005887.1 + 1338 0.68 0.819791
Target:  5'- cACUACAagccgcaggGCGAGAcgcUCGAgcgcuacauccugucCCGCGCGUc -3'
miRNA:   3'- aUGAUGU---------UGCUCU---AGCUa--------------GGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 1418 0.67 0.847054
Target:  5'- cGCU-CGGCGuugccGAacUCGGUgCGCGCGCg -3'
miRNA:   3'- aUGAuGUUGCu----CU--AGCUAgGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 2197 0.68 0.773954
Target:  5'- aGCUcacacGCGGCGAGcgCGGcgcgcagcgcgcaCCGCACGCu -3'
miRNA:   3'- aUGA-----UGUUGCUCuaGCUa------------GGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 2391 0.7 0.689707
Target:  5'- cUugUGCGAauCGAGAUCGAgacaCGCgauGCGCg -3'
miRNA:   3'- -AugAUGUU--GCUCUAGCUag--GCG---UGCG- -5'
28074 3' -50.3 NC_005887.1 + 3194 0.68 0.798884
Target:  5'- cGCgcccggACAGCGAGAagGG-CCGCgaGCGCu -3'
miRNA:   3'- aUGa-----UGUUGCUCUagCUaGGCG--UGCG- -5'
28074 3' -50.3 NC_005887.1 + 3344 0.72 0.562792
Target:  5'- cGCUG-AACGAGAUCGcGUCCGUcaagGCGUa -3'
miRNA:   3'- aUGAUgUUGCUCUAGC-UAGGCG----UGCG- -5'
28074 3' -50.3 NC_005887.1 + 3375 0.68 0.818816
Target:  5'- -cCUGCAGgGAG--UGGUgCGCACGCu -3'
miRNA:   3'- auGAUGUUgCUCuaGCUAgGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 3701 0.7 0.712458
Target:  5'- -uCUACcACGccGUCGAgCCGCGCGCc -3'
miRNA:   3'- auGAUGuUGCucUAGCUaGGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 3779 0.69 0.767568
Target:  5'- gGCU-CGACGAGGgccgCGA-CCGCAuCGUg -3'
miRNA:   3'- aUGAuGUUGCUCUa---GCUaGGCGU-GCG- -5'
28074 3' -50.3 NC_005887.1 + 4233 0.69 0.745894
Target:  5'- gUGCUGCucGCGccGAcgcUCGG-CCGCACGCa -3'
miRNA:   3'- -AUGAUGu-UGCu-CU---AGCUaGGCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 4475 0.67 0.847054
Target:  5'- gGCUGCcGCGaAGGUgcCGAaCgGCGCGCg -3'
miRNA:   3'- aUGAUGuUGC-UCUA--GCUaGgCGUGCG- -5'
28074 3' -50.3 NC_005887.1 + 4761 0.7 0.689707
Target:  5'- cACU--GACGAGAUcCGAauUCCGC-CGCg -3'
miRNA:   3'- aUGAugUUGCUCUA-GCU--AGGCGuGCG- -5'
28074 3' -50.3 NC_005887.1 + 4865 0.79 0.23355
Target:  5'- --gUGCAGCGcacGAUCGAUCCGCuCGCg -3'
miRNA:   3'- augAUGUUGCu--CUAGCUAGGCGuGCG- -5'
28074 3' -50.3 NC_005887.1 + 5040 0.69 0.756802
Target:  5'- cUGCUGCGACGAccgaAUCGAaaCCGUcugGCGCg -3'
miRNA:   3'- -AUGAUGUUGCUc---UAGCUa-GGCG---UGCG- -5'
28074 3' -50.3 NC_005887.1 + 5366 0.71 0.65515
Target:  5'- gUGCUcgcCGGCGAGcUCGAcCCGCGCGa -3'
miRNA:   3'- -AUGAu--GUUGCUCuAGCUaGGCGUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.