miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28074 5' -60.6 NC_005887.1 + 9912 1.07 0.000257
Target:  5'- gCUGCGCAACCUGAUCGCCGCCGGCCAc -3'
miRNA:   3'- -GACGCGUUGGACUAGCGGCGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 40175 0.82 0.023615
Target:  5'- gCUGCGCGACggcacgaaggGaAUCGCCGCCGGCCAg -3'
miRNA:   3'- -GACGCGUUGga--------C-UAGCGGCGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 4632 0.79 0.038773
Target:  5'- cCUGCGCGaauacgcgcugaACCUGAUCGCCcCCGGCg- -3'
miRNA:   3'- -GACGCGU------------UGGACUAGCGGcGGCCGgu -5'
28074 5' -60.6 NC_005887.1 + 15696 0.78 0.050318
Target:  5'- -cGCGCGGCCgGAUgauucCGCCGCCGGCg- -3'
miRNA:   3'- gaCGCGUUGGaCUA-----GCGGCGGCCGgu -5'
28074 5' -60.6 NC_005887.1 + 27243 0.78 0.053306
Target:  5'- -gGCGCAACUgcAUCGCgCGCCGGCCc -3'
miRNA:   3'- gaCGCGUUGGacUAGCG-GCGGCCGGu -5'
28074 5' -60.6 NC_005887.1 + 30733 0.78 0.053306
Target:  5'- gCUGCGUGGCCUucgcGAcuUCGCCGUCGGUCAg -3'
miRNA:   3'- -GACGCGUUGGA----CU--AGCGGCGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 11386 0.76 0.065181
Target:  5'- -aGCGCAGCCgGAgCGCUGgCGGCCGg -3'
miRNA:   3'- gaCGCGUUGGaCUaGCGGCgGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 14017 0.76 0.069019
Target:  5'- cCUcCGCAACCgccgGcgCGCCGCCGGCgCAg -3'
miRNA:   3'- -GAcGCGUUGGa---CuaGCGGCGGCCG-GU- -5'
28074 5' -60.6 NC_005887.1 + 2957 0.75 0.086656
Target:  5'- -gGuCGCGACCacgGuugCGCCGCCGGCCu -3'
miRNA:   3'- gaC-GCGUUGGa--Cua-GCGGCGGCCGGu -5'
28074 5' -60.6 NC_005887.1 + 25611 0.74 0.091696
Target:  5'- uCUGcCGCAuguaauccgACUUGAUCG-CGCCGGCCGu -3'
miRNA:   3'- -GAC-GCGU---------UGGACUAGCgGCGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 39467 0.74 0.094319
Target:  5'- -cGCGU-GCCUGAaaagcgcgugUUGCCGCUGGCCAg -3'
miRNA:   3'- gaCGCGuUGGACU----------AGCGGCGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 758 0.74 0.099779
Target:  5'- -cGcCGC-ACCUGGgcCGCCGCUGGCCGa -3'
miRNA:   3'- gaC-GCGuUGGACUa-GCGGCGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 34949 0.73 0.111605
Target:  5'- -gGUGCGACCguggcGAUCGUCGUCGGCgAg -3'
miRNA:   3'- gaCGCGUUGGa----CUAGCGGCGGCCGgU- -5'
28074 5' -60.6 NC_005887.1 + 966 0.72 0.13146
Target:  5'- -cGUGCAGCacgaggUGAUCGCCgacacgcgcaauuGCCGGCCGc -3'
miRNA:   3'- gaCGCGUUGg-----ACUAGCGG-------------CGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 29017 0.72 0.131823
Target:  5'- aCUGCGCGGCgaGAUCcgcgauGCgGCCGGCg- -3'
miRNA:   3'- -GACGCGUUGgaCUAG------CGgCGGCCGgu -5'
28074 5' -60.6 NC_005887.1 + 37689 0.72 0.134391
Target:  5'- uCUGCGCAGCggucugcgcgucgCUGAgauccuugaucgCGCCGgCGGCCAc -3'
miRNA:   3'- -GACGCGUUG-------------GACUa-----------GCGGCgGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 22976 0.72 0.135133
Target:  5'- gCUGCGCGagcauggcgcguuGCCgcUGAUCGaCGCCGGUCGc -3'
miRNA:   3'- -GACGCGU-------------UGG--ACUAGCgGCGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 27373 0.72 0.135505
Target:  5'- cCUGCGCGGCCUGcgCGgCGuaGGCg- -3'
miRNA:   3'- -GACGCGUUGGACuaGCgGCggCCGgu -5'
28074 5' -60.6 NC_005887.1 + 36540 0.72 0.143155
Target:  5'- -cGCGcCGACUcGAUCGCCGCCgucuGGUCAu -3'
miRNA:   3'- gaCGC-GUUGGaCUAGCGGCGG----CCGGU- -5'
28074 5' -60.6 NC_005887.1 + 22837 0.72 0.148743
Target:  5'- gUGCuCAACCggcaGAUCucgguaccaucgacgGCCGCCGGCCGc -3'
miRNA:   3'- gACGcGUUGGa---CUAG---------------CGGCGGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.