miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28074 5' -60.6 NC_005887.1 + 15930 0.7 0.197844
Target:  5'- -cGCGCgGGCCgGaAUCGaugCGCCGGCCAc -3'
miRNA:   3'- gaCGCG-UUGGaC-UAGCg--GCGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 3261 0.71 0.168523
Target:  5'- gCUGCGCAACUUcGUCGCCGCgaUGGauuCCAu -3'
miRNA:   3'- -GACGCGUUGGAcUAGCGGCG--GCC---GGU- -5'
28074 5' -60.6 NC_005887.1 + 12890 0.71 0.168523
Target:  5'- gUGCGCGAgCUGAUCgGCaCGgCGaGCCAg -3'
miRNA:   3'- gACGCGUUgGACUAG-CG-GCgGC-CGGU- -5'
28074 5' -60.6 NC_005887.1 + 25043 0.71 0.173125
Target:  5'- -aGCGCAgaacccauGCCgcagUGCCGCUGGCCGa -3'
miRNA:   3'- gaCGCGU--------UGGacuaGCGGCGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 36420 0.71 0.173125
Target:  5'- uUGCGCAccGCCUuccgCGCgGCCGGCUu -3'
miRNA:   3'- gACGCGU--UGGAcua-GCGgCGGCCGGu -5'
28074 5' -60.6 NC_005887.1 + 24214 0.7 0.177361
Target:  5'- gUGCGUguugccaAGCCguuUGAUgCGCUGCUGGCCAc -3'
miRNA:   3'- gACGCG-------UUGG---ACUA-GCGGCGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 16509 0.7 0.177838
Target:  5'- aUGuCGCAgGCCgaucgcGUCGCCGCCGGCg- -3'
miRNA:   3'- gAC-GCGU-UGGac----UAGCGGCGGCCGgu -5'
28074 5' -60.6 NC_005887.1 + 18222 0.7 0.182664
Target:  5'- uCUGCGCAcgaAggUGAUCGCC-UCGGCCAc -3'
miRNA:   3'- -GACGCGU---UggACUAGCGGcGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 12337 0.7 0.182664
Target:  5'- aCUGCGUAc----GUCGCuCGCCGGCCAg -3'
miRNA:   3'- -GACGCGUuggacUAGCG-GCGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 40767 0.71 0.155371
Target:  5'- -gGCGC-GCC-GcgCGCCGCCGaGCCGg -3'
miRNA:   3'- gaCGCGuUGGaCuaGCGGCGGC-CGGU- -5'
28074 5' -60.6 NC_005887.1 + 14240 0.71 0.151198
Target:  5'- -gGCGCGGCauccGAUCuuGCCGCCGGUCu -3'
miRNA:   3'- gaCGCGUUGga--CUAG--CGGCGGCCGGu -5'
28074 5' -60.6 NC_005887.1 + 22837 0.72 0.148743
Target:  5'- gUGCuCAACCggcaGAUCucgguaccaucgacgGCCGCCGGCCGc -3'
miRNA:   3'- gACGcGUUGGa---CUAG---------------CGGCGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 15696 0.78 0.050318
Target:  5'- -cGCGCGGCCgGAUgauucCGCCGCCGGCg- -3'
miRNA:   3'- gaCGCGUUGGaCUA-----GCGGCGGCCGgu -5'
28074 5' -60.6 NC_005887.1 + 27243 0.78 0.053306
Target:  5'- -gGCGCAACUgcAUCGCgCGCCGGCCc -3'
miRNA:   3'- gaCGCGUUGGacUAGCG-GCGGCCGGu -5'
28074 5' -60.6 NC_005887.1 + 30733 0.78 0.053306
Target:  5'- gCUGCGUGGCCUucgcGAcuUCGCCGUCGGUCAg -3'
miRNA:   3'- -GACGCGUUGGA----CU--AGCGGCGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 11386 0.76 0.065181
Target:  5'- -aGCGCAGCCgGAgCGCUGgCGGCCGg -3'
miRNA:   3'- gaCGCGUUGGaCUaGCGGCgGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 14017 0.76 0.069019
Target:  5'- cCUcCGCAACCgccgGcgCGCCGCCGGCgCAg -3'
miRNA:   3'- -GAcGCGUUGGa---CuaGCGGCGGCCG-GU- -5'
28074 5' -60.6 NC_005887.1 + 39467 0.74 0.094319
Target:  5'- -cGCGU-GCCUGAaaagcgcgugUUGCCGCUGGCCAg -3'
miRNA:   3'- gaCGCGuUGGACU----------AGCGGCGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 966 0.72 0.13146
Target:  5'- -cGUGCAGCacgaggUGAUCGCCgacacgcgcaauuGCCGGCCGc -3'
miRNA:   3'- gaCGCGUUGg-----ACUAGCGG-------------CGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 22976 0.72 0.135133
Target:  5'- gCUGCGCGagcauggcgcguuGCCgcUGAUCGaCGCCGGUCGc -3'
miRNA:   3'- -GACGCGU-------------UGG--ACUAGCgGCGGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.