miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28074 5' -60.6 NC_005887.1 + 546 0.69 0.237578
Target:  5'- -cGCGCGccgcGCCgGAUacagcgcgaaGaCCGCCGGCCAg -3'
miRNA:   3'- gaCGCGU----UGGaCUAg---------C-GGCGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 622 0.7 0.177837
Target:  5'- -cGCGC-GCCgggaucgGAUCGCCGCCcGUCAu -3'
miRNA:   3'- gaCGCGuUGGa------CUAGCGGCGGcCGGU- -5'
28074 5' -60.6 NC_005887.1 + 758 0.74 0.099779
Target:  5'- -cGcCGC-ACCUGGgcCGCCGCUGGCCGa -3'
miRNA:   3'- gaC-GCGuUGGACUa-GCGGCGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 873 0.67 0.298221
Target:  5'- -cGCGUGGCCcg--CGCCGCCGGaCGa -3'
miRNA:   3'- gaCGCGUUGGacuaGCGGCGGCCgGU- -5'
28074 5' -60.6 NC_005887.1 + 966 0.72 0.13146
Target:  5'- -cGUGCAGCacgaggUGAUCGCCgacacgcgcaauuGCCGGCCGc -3'
miRNA:   3'- gaCGCGUUGg-----ACUAGCGG-------------CGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 1556 0.67 0.320944
Target:  5'- -gGCGCGucGCCgccacGAaccUCGaCCGCCGGCUc -3'
miRNA:   3'- gaCGCGU--UGGa----CU---AGC-GGCGGCCGGu -5'
28074 5' -60.6 NC_005887.1 + 1714 0.66 0.344938
Target:  5'- -cGCGCGcucgucaguGCCUGucUUGCCGaugugCGGCCAc -3'
miRNA:   3'- gaCGCGU---------UGGACu-AGCGGCg----GCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 1814 0.67 0.298221
Target:  5'- -aGCGCcaGACCgucGUCGCUGCCGcgcGCCGc -3'
miRNA:   3'- gaCGCG--UUGGac-UAGCGGCGGC---CGGU- -5'
28074 5' -60.6 NC_005887.1 + 2957 0.75 0.086656
Target:  5'- -gGuCGCGACCacgGuugCGCCGCCGGCCu -3'
miRNA:   3'- gaC-GCGUUGGa--Cua-GCGGCGGCCGGu -5'
28074 5' -60.6 NC_005887.1 + 3133 0.67 0.283777
Target:  5'- aCUGCGCAaggcgaaggGCUUGA-CGCUGCagcaguuGGCCGa -3'
miRNA:   3'- -GACGCGU---------UGGACUaGCGGCGg------CCGGU- -5'
28074 5' -60.6 NC_005887.1 + 3261 0.71 0.168523
Target:  5'- gCUGCGCAACUUcGUCGCCGCgaUGGauuCCAu -3'
miRNA:   3'- -GACGCGUUGGAcUAGCGGCG--GCC---GGU- -5'
28074 5' -60.6 NC_005887.1 + 4146 0.66 0.378889
Target:  5'- gCUGCGCGcgaCUGGcUCGgguauugaGCCGGCCAu -3'
miRNA:   3'- -GACGCGUug-GACU-AGCgg------CGGCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 4271 0.66 0.378889
Target:  5'- aCUGCuCGGCCcgaUGAUCGCgCGCgaGGUCGa -3'
miRNA:   3'- -GACGcGUUGG---ACUAGCG-GCGg-CCGGU- -5'
28074 5' -60.6 NC_005887.1 + 4335 0.69 0.237578
Target:  5'- aUGcCGCAGgaaCUGAUCGaCGCCGGCgCGg -3'
miRNA:   3'- gAC-GCGUUg--GACUAGCgGCGGCCG-GU- -5'
28074 5' -60.6 NC_005887.1 + 4622 0.68 0.263157
Target:  5'- -cGcCGCGGCgCcGGUgGCCGCCGGCgCGa -3'
miRNA:   3'- gaC-GCGUUG-GaCUAgCGGCGGCCG-GU- -5'
28074 5' -60.6 NC_005887.1 + 4632 0.79 0.038773
Target:  5'- cCUGCGCGaauacgcgcugaACCUGAUCGCCcCCGGCg- -3'
miRNA:   3'- -GACGCGU------------UGGACUAGCGGcGGCCGgu -5'
28074 5' -60.6 NC_005887.1 + 4773 0.66 0.328801
Target:  5'- -aGCGCGggaAgCUGA-CGCCaGCCGGCgAg -3'
miRNA:   3'- gaCGCGU---UgGACUaGCGG-CGGCCGgU- -5'
28074 5' -60.6 NC_005887.1 + 4885 0.68 0.276765
Target:  5'- gCU-CGCGACgaUGGUCGCCGagGGCCGg -3'
miRNA:   3'- -GAcGCGUUGg-ACUAGCGGCggCCGGU- -5'
28074 5' -60.6 NC_005887.1 + 5350 0.68 0.243771
Target:  5'- -cGCGUAcgGCCUGcgCGUgcuCGCCGGCgAg -3'
miRNA:   3'- gaCGCGU--UGGACuaGCG---GCGGCCGgU- -5'
28074 5' -60.6 NC_005887.1 + 5435 0.66 0.336799
Target:  5'- -gGCGCGACCa---CGCCGCCcGCUg -3'
miRNA:   3'- gaCGCGUUGGacuaGCGGCGGcCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.