miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28077 3' -60.2 NC_005887.1 + 33810 0.66 0.396685
Target:  5'- cACGGCcaccACGcGGGUGUcagGUCGGCgcgGCg -3'
miRNA:   3'- aUGCCGc---UGC-CUCGCGa--CAGCCGa--CG- -5'
28077 3' -60.2 NC_005887.1 + 24212 0.66 0.38772
Target:  5'- gACGuCGGCGGcccGCGCUucGcCGGUUGCg -3'
miRNA:   3'- aUGCcGCUGCCu--CGCGA--CaGCCGACG- -5'
28077 3' -60.2 NC_005887.1 + 40529 0.66 0.38772
Target:  5'- cGCGGCGcGCGGcAGCGaCgacgGUCuGGCgcucGCg -3'
miRNA:   3'- aUGCCGC-UGCC-UCGC-Ga---CAG-CCGa---CG- -5'
28077 3' -60.2 NC_005887.1 + 1485 0.66 0.38772
Target:  5'- gACGGCGuGCGGcgcucGCGCggcgCGGCcgUGCg -3'
miRNA:   3'- aUGCCGC-UGCCu----CGCGaca-GCCG--ACG- -5'
28077 3' -60.2 NC_005887.1 + 36853 0.66 0.38772
Target:  5'- cUGCGGCcggugcuGCGGccGGUGCUGcgccaUCGGcCUGCg -3'
miRNA:   3'- -AUGCCGc------UGCC--UCGCGAC-----AGCC-GACG- -5'
28077 3' -60.2 NC_005887.1 + 27470 0.66 0.378889
Target:  5'- aGCuGGCGcauucugccgcGCGGugcGCGCUGUU-GCUGCg -3'
miRNA:   3'- aUG-CCGC-----------UGCCu--CGCGACAGcCGACG- -5'
28077 3' -60.2 NC_005887.1 + 14773 0.66 0.378889
Target:  5'- gACGGCG-CGcucGCGCUGUacuuccgcugCGuGCUGCa -3'
miRNA:   3'- aUGCCGCuGCcu-CGCGACA----------GC-CGACG- -5'
28077 3' -60.2 NC_005887.1 + 2194 0.66 0.378014
Target:  5'- cGCGGUGAuCGGgcAGCGCaaaccgaUGggCGGCUGg -3'
miRNA:   3'- aUGCCGCU-GCC--UCGCG-------ACa-GCCGACg -5'
28077 3' -60.2 NC_005887.1 + 29618 0.66 0.370194
Target:  5'- cGCGGCG-CGaucGAGCGCauUCuGCUGCu -3'
miRNA:   3'- aUGCCGCuGC---CUCGCGacAGcCGACG- -5'
28077 3' -60.2 NC_005887.1 + 37630 0.66 0.370194
Target:  5'- cGCGGCGguuccagaaACGGAGgaaucgGCUGaUCGGC-GCg -3'
miRNA:   3'- aUGCCGC---------UGCCUCg-----CGAC-AGCCGaCG- -5'
28077 3' -60.2 NC_005887.1 + 30144 0.66 0.370194
Target:  5'- -cCGGCGcgccCGGcgcGGCGCUGUccuucgCGGuCUGCa -3'
miRNA:   3'- auGCCGCu---GCC---UCGCGACA------GCC-GACG- -5'
28077 3' -60.2 NC_005887.1 + 38815 0.66 0.370194
Target:  5'- -uCGGCGAaccaGaGGCGCUGcaUCGGCacguUGCg -3'
miRNA:   3'- auGCCGCUg---CcUCGCGAC--AGCCG----ACG- -5'
28077 3' -60.2 NC_005887.1 + 5239 0.66 0.368471
Target:  5'- --gGGCGACGGccGCGCgaucgccgaGGCUGUg -3'
miRNA:   3'- augCCGCUGCCu-CGCGacag-----CCGACG- -5'
28077 3' -60.2 NC_005887.1 + 23424 0.66 0.353217
Target:  5'- gACGGCcgcuGCGagauucgguGAGCGCUG-CGgGCUGCc -3'
miRNA:   3'- aUGCCGc---UGC---------CUCGCGACaGC-CGACG- -5'
28077 3' -60.2 NC_005887.1 + 39905 0.67 0.348233
Target:  5'- gACGGCGcCGuAGCGCgcgaggugucauucGUCGGCgcggGCu -3'
miRNA:   3'- aUGCCGCuGCcUCGCGa-------------CAGCCGa---CG- -5'
28077 3' -60.2 NC_005887.1 + 35199 0.67 0.328009
Target:  5'- aACGGCGGgGcGAuucguuGCGCagcagcuUGUCGGcCUGCg -3'
miRNA:   3'- aUGCCGCUgC-CU------CGCG-------ACAGCC-GACG- -5'
28077 3' -60.2 NC_005887.1 + 39092 0.67 0.320944
Target:  5'- cGCGGCGACGaaguugcgcAGCGCgagCGGC-GCg -3'
miRNA:   3'- aUGCCGCUGCc--------UCGCGacaGCCGaCG- -5'
28077 3' -60.2 NC_005887.1 + 26401 0.67 0.305654
Target:  5'- aGCGGCGuGCGGcGCGUgGcCGGC-GCa -3'
miRNA:   3'- aUGCCGC-UGCCuCGCGaCaGCCGaCG- -5'
28077 3' -60.2 NC_005887.1 + 41790 0.68 0.290929
Target:  5'- -cUGGcCGGCGGucuucGCGCUGUaucCGGCgcgGCg -3'
miRNA:   3'- auGCC-GCUGCCu----CGCGACA---GCCGa--CG- -5'
28077 3' -60.2 NC_005887.1 + 11779 0.68 0.283777
Target:  5'- -uCGGCGGCGuccuCGCUGcUCGGCgGCg -3'
miRNA:   3'- auGCCGCUGCcuc-GCGAC-AGCCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.