miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28077 5' -54.4 NC_005887.1 + 8508 1.13 0.000462
Target:  5'- cGUACGCCCUGCAUGCGUUCGAUCGCCg -3'
miRNA:   3'- -CAUGCGGGACGUACGCAAGCUAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 30741 0.8 0.112012
Target:  5'- -cACGCUCUGCAccUGCGUgUCGAgCGCCg -3'
miRNA:   3'- caUGCGGGACGU--ACGCA-AGCUaGCGG- -5'
28077 5' -54.4 NC_005887.1 + 29255 0.79 0.125672
Target:  5'- -cACGCCCUGCAgcacuccGCGaUCGAgCGCCg -3'
miRNA:   3'- caUGCGGGACGUa------CGCaAGCUaGCGG- -5'
28077 5' -54.4 NC_005887.1 + 26115 0.77 0.176372
Target:  5'- cGUGCGCUCgccgGCcgGCGUaUCGAUCGUg -3'
miRNA:   3'- -CAUGCGGGa---CGuaCGCA-AGCUAGCGg -5'
28077 5' -54.4 NC_005887.1 + 27423 0.76 0.202432
Target:  5'- -aGCGCgCgGCGUGCG-UCGAUCGCg -3'
miRNA:   3'- caUGCGgGaCGUACGCaAGCUAGCGg -5'
28077 5' -54.4 NC_005887.1 + 26489 0.74 0.271617
Target:  5'- gGUGCGCCugCUGCGcgcggGCGUuucccUCGAUCGCg -3'
miRNA:   3'- -CAUGCGG--GACGUa----CGCA-----AGCUAGCGg -5'
28077 5' -54.4 NC_005887.1 + 25141 0.73 0.301126
Target:  5'- -cACGCCCUGCuUGCGcggCGcaacAUUGCCg -3'
miRNA:   3'- caUGCGGGACGuACGCaa-GC----UAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 16454 0.73 0.316785
Target:  5'- cGUGCGCgCggGCAUGCGcUCGAcCGCg -3'
miRNA:   3'- -CAUGCGgGa-CGUACGCaAGCUaGCGg -5'
28077 5' -54.4 NC_005887.1 + 33109 0.72 0.367387
Target:  5'- gGU-CGCCCgGCuUGCGUUCc-UCGCCg -3'
miRNA:   3'- -CAuGCGGGaCGuACGCAAGcuAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 27899 0.71 0.376343
Target:  5'- -gACGCCUUGCAcgGUcuggUCGAUCGCg -3'
miRNA:   3'- caUGCGGGACGUa-CGca--AGCUAGCGg -5'
28077 5' -54.4 NC_005887.1 + 33420 0.71 0.404081
Target:  5'- -gGCGCUCUGCGUcGCGcg-GAUCGCg -3'
miRNA:   3'- caUGCGGGACGUA-CGCaagCUAGCGg -5'
28077 5' -54.4 NC_005887.1 + 2358 0.7 0.433076
Target:  5'- -gACGUCCUGCAUGuCGggccaCGGcgucUCGCCc -3'
miRNA:   3'- caUGCGGGACGUAC-GCaa---GCU----AGCGG- -5'
28077 5' -54.4 NC_005887.1 + 36301 0.7 0.453065
Target:  5'- gGUugGCCgauCUGCGcgGCGgUCGA-CGCCg -3'
miRNA:   3'- -CAugCGG---GACGUa-CGCaAGCUaGCGG- -5'
28077 5' -54.4 NC_005887.1 + 22346 0.7 0.463246
Target:  5'- uGU-CGCCCUGCAUGaugaugcaGUcucCGGUCGCa -3'
miRNA:   3'- -CAuGCGGGACGUACg-------CAa--GCUAGCGg -5'
28077 5' -54.4 NC_005887.1 + 37687 0.7 0.463246
Target:  5'- --cCGCCCcGCAUGCaagCGA-CGCCg -3'
miRNA:   3'- cauGCGGGaCGUACGcaaGCUaGCGG- -5'
28077 5' -54.4 NC_005887.1 + 32746 0.7 0.473545
Target:  5'- -gGCGCUC-GCGUGCGcgccggCGcgCGCCa -3'
miRNA:   3'- caUGCGGGaCGUACGCaa----GCuaGCGG- -5'
28077 5' -54.4 NC_005887.1 + 26052 0.69 0.493424
Target:  5'- -gGCGUCCUGCGUguucaagGCGUgcucaucgUCGAUCuGCUg -3'
miRNA:   3'- caUGCGGGACGUA-------CGCA--------AGCUAG-CGG- -5'
28077 5' -54.4 NC_005887.1 + 15203 0.69 0.494481
Target:  5'- aGUACGgcggcaaCCUGCAgGCGa-UGAUCGCCg -3'
miRNA:   3'- -CAUGCg------GGACGUaCGCaaGCUAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 40141 0.69 0.515828
Target:  5'- gGUGCGCgCUGCGcGCcg-CGcUCGCCg -3'
miRNA:   3'- -CAUGCGgGACGUaCGcaaGCuAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 40921 0.69 0.515828
Target:  5'- -aACGCCUUccaGCAgcucGCGUUCGucUUGCCg -3'
miRNA:   3'- caUGCGGGA---CGUa---CGCAAGCu-AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.