miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28077 5' -54.4 NC_005887.1 + 213 0.68 0.548511
Target:  5'- -cGCuGCUCUGCGaaUGCGcgCcagGAUCGCCa -3'
miRNA:   3'- caUG-CGGGACGU--ACGCaaG---CUAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 2358 0.7 0.433076
Target:  5'- -gACGUCCUGCAUGuCGggccaCGGcgucUCGCCc -3'
miRNA:   3'- caUGCGGGACGUAC-GCaa---GCU----AGCGG- -5'
28077 5' -54.4 NC_005887.1 + 3249 0.67 0.649339
Target:  5'- -cGCGCCgCUcGCGcUGCGcaacUUCG-UCGCCg -3'
miRNA:   3'- caUGCGG-GA-CGU-ACGC----AAGCuAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 4062 0.65 0.715141
Target:  5'- -gGCaCCCugaccguUGCGUGCGaagUCG-UCGCCa -3'
miRNA:   3'- caUGcGGG-------ACGUACGCa--AGCuAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 5352 0.67 0.649339
Target:  5'- cGUACGgCCUGC--GCGUgc--UCGCCg -3'
miRNA:   3'- -CAUGCgGGACGuaCGCAagcuAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 7214 0.66 0.705235
Target:  5'- cGUGCGCaggcgCUGUcgGCG-UCGggCGCa -3'
miRNA:   3'- -CAUGCGg----GACGuaCGCaAGCuaGCGg -5'
28077 5' -54.4 NC_005887.1 + 7699 0.69 0.524472
Target:  5'- -gGCGCCCgcaaguacgaggGCgAUGUGUUCGAcaUGCCg -3'
miRNA:   3'- caUGCGGGa-----------CG-UACGCAAGCUa-GCGG- -5'
28077 5' -54.4 NC_005887.1 + 8508 1.13 0.000462
Target:  5'- cGUACGCCCUGCAUGCGUUCGAUCGCCg -3'
miRNA:   3'- -CAUGCGGGACGUACGCAAGCUAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 12478 0.67 0.626784
Target:  5'- cGUACGCUCggccugccGCAggacGUGUUC-AUCGCCu -3'
miRNA:   3'- -CAUGCGGGa-------CGUa---CGCAAGcUAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 15010 0.67 0.649339
Target:  5'- -cGCGCCgCUGCGcgugGCGcagUCGAcgUgGCCg -3'
miRNA:   3'- caUGCGG-GACGUa---CGCa--AGCU--AgCGG- -5'
28077 5' -54.4 NC_005887.1 + 15201 0.66 0.660597
Target:  5'- -cGCGCCCgugGCcguucggccGCGU--GAUCGCCg -3'
miRNA:   3'- caUGCGGGa--CGua-------CGCAagCUAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 15203 0.69 0.494481
Target:  5'- aGUACGgcggcaaCCUGCAgGCGa-UGAUCGCCg -3'
miRNA:   3'- -CAUGCg------GGACGUaCGCaaGCUAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 16299 0.66 0.659472
Target:  5'- -cACGCCUUgaacacgcaggacGCcgGCcuGUUCGAggUCGCCg -3'
miRNA:   3'- caUGCGGGA-------------CGuaCG--CAAGCU--AGCGG- -5'
28077 5' -54.4 NC_005887.1 + 16454 0.73 0.316785
Target:  5'- cGUGCGCgCggGCAUGCGcUCGAcCGCg -3'
miRNA:   3'- -CAUGCGgGa-CGUACGCaAGCUaGCGg -5'
28077 5' -54.4 NC_005887.1 + 17211 0.66 0.694158
Target:  5'- uUGCGCCgCgcaagcaggGCGUGUGggacaCGAUCGCg -3'
miRNA:   3'- cAUGCGG-Ga--------CGUACGCaa---GCUAGCGg -5'
28077 5' -54.4 NC_005887.1 + 17927 0.68 0.548511
Target:  5'- -cGCGaCCUGCGUGCGcaCGAacgagcUCGUCa -3'
miRNA:   3'- caUGCgGGACGUACGCaaGCU------AGCGG- -5'
28077 5' -54.4 NC_005887.1 + 22346 0.7 0.463246
Target:  5'- uGU-CGCCCUGCAUGaugaugcaGUcucCGGUCGCa -3'
miRNA:   3'- -CAuGCGGGACGUACg-------CAa--GCUAGCGg -5'
28077 5' -54.4 NC_005887.1 + 25141 0.73 0.301126
Target:  5'- -cACGCCCUGCuUGCGcggCGcaacAUUGCCg -3'
miRNA:   3'- caUGCGGGACGuACGCaa-GC----UAGCGG- -5'
28077 5' -54.4 NC_005887.1 + 25823 0.66 0.660597
Target:  5'- -cGCGCCCacucggcGCcgGCGgcgacgCGAUCgGCCu -3'
miRNA:   3'- caUGCGGGa------CGuaCGCaa----GCUAG-CGG- -5'
28077 5' -54.4 NC_005887.1 + 26052 0.69 0.493424
Target:  5'- -gGCGUCCUGCGUguucaagGCGUgcucaucgUCGAUCuGCUg -3'
miRNA:   3'- caUGCGGGACGUA-------CGCA--------AGCUAG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.