Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28077 | 5' | -54.4 | NC_005887.1 | + | 17211 | 0.66 | 0.694158 |
Target: 5'- uUGCGCCgCgcaagcaggGCGUGUGggacaCGAUCGCg -3' miRNA: 3'- cAUGCGG-Ga--------CGUACGCaa---GCUAGCGg -5' |
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28077 | 5' | -54.4 | NC_005887.1 | + | 37333 | 0.67 | 0.615509 |
Target: 5'- -aGCGCCg-GCAcugGCa-UCGGUCGCCg -3' miRNA: 3'- caUGCGGgaCGUa--CGcaAGCUAGCGG- -5' |
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28077 | 5' | -54.4 | NC_005887.1 | + | 31753 | 0.67 | 0.638065 |
Target: 5'- cUGCGCCCcGUGUGacaaGUcgUCGGagUCGCCc -3' miRNA: 3'- cAUGCGGGaCGUACg---CA--AGCU--AGCGG- -5' |
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28077 | 5' | -54.4 | NC_005887.1 | + | 37472 | 0.67 | 0.647085 |
Target: 5'- aGUGCGCCggaUGCGaucaggGCGgcggucaguuccUUGAUCGCCg -3' miRNA: 3'- -CAUGCGGg--ACGUa-----CGCa-----------AGCUAGCGG- -5' |
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28077 | 5' | -54.4 | NC_005887.1 | + | 3249 | 0.67 | 0.649339 |
Target: 5'- -cGCGCCgCUcGCGcUGCGcaacUUCG-UCGCCg -3' miRNA: 3'- caUGCGG-GA-CGU-ACGC----AAGCuAGCGG- -5' |
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28077 | 5' | -54.4 | NC_005887.1 | + | 35832 | 0.67 | 0.649339 |
Target: 5'- cGUGCGCCgC-GUcgGCGUagaUC-AUCGCCu -3' miRNA: 3'- -CAUGCGG-GaCGuaCGCA---AGcUAGCGG- -5' |
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28077 | 5' | -54.4 | NC_005887.1 | + | 16299 | 0.66 | 0.659472 |
Target: 5'- -cACGCCUUgaacacgcaggacGCcgGCcuGUUCGAggUCGCCg -3' miRNA: 3'- caUGCGGGA-------------CGuaCG--CAAGCU--AGCGG- -5' |
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28077 | 5' | -54.4 | NC_005887.1 | + | 36568 | 0.66 | 0.660597 |
Target: 5'- cGUGCGCCUgcuucgcaguagUGCAUGCaua-GAUgaCGCCg -3' miRNA: 3'- -CAUGCGGG------------ACGUACGcaagCUA--GCGG- -5' |
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28077 | 5' | -54.4 | NC_005887.1 | + | 29091 | 0.66 | 0.660597 |
Target: 5'- -aACGCCC-GCcuUGUGaccgUCGGUCGCg -3' miRNA: 3'- caUGCGGGaCGu-ACGCa---AGCUAGCGg -5' |
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28077 | 5' | -54.4 | NC_005887.1 | + | 30155 | 0.68 | 0.593014 |
Target: 5'- -gGCGCCgaUGCcgGCG-UCGAagUCGCg -3' miRNA: 3'- caUGCGGg-ACGuaCGCaAGCU--AGCGg -5' |
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28077 | 5' | -54.4 | NC_005887.1 | + | 41248 | 0.68 | 0.581813 |
Target: 5'- -cACGCaCCUGCucgGCG-UCGGcaauggCGCCg -3' miRNA: 3'- caUGCG-GGACGua-CGCaAGCUa-----GCGG- -5' |
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28077 | 5' | -54.4 | NC_005887.1 | + | 40741 | 0.68 | 0.570657 |
Target: 5'- --cCGCCC-GCGU-CGaggCGAUCGCCg -3' miRNA: 3'- cauGCGGGaCGUAcGCaa-GCUAGCGG- -5' |
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28077 | 5' | -54.4 | NC_005887.1 | + | 33109 | 0.72 | 0.367387 |
Target: 5'- gGU-CGCCCgGCuUGCGUUCc-UCGCCg -3' miRNA: 3'- -CAuGCGGGaCGuACGCAAGcuAGCGG- -5' |
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28077 | 5' | -54.4 | NC_005887.1 | + | 36301 | 0.7 | 0.453065 |
Target: 5'- gGUugGCCgauCUGCGcgGCGgUCGA-CGCCg -3' miRNA: 3'- -CAugCGG---GACGUa-CGCaAGCUaGCGG- -5' |
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28077 | 5' | -54.4 | NC_005887.1 | + | 37687 | 0.7 | 0.463246 |
Target: 5'- --cCGCCCcGCAUGCaagCGA-CGCCg -3' miRNA: 3'- cauGCGGGaCGUACGcaaGCUaGCGG- -5' |
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28077 | 5' | -54.4 | NC_005887.1 | + | 32746 | 0.7 | 0.473545 |
Target: 5'- -gGCGCUC-GCGUGCGcgccggCGcgCGCCa -3' miRNA: 3'- caUGCGGGaCGUACGCaa----GCuaGCGG- -5' |
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28077 | 5' | -54.4 | NC_005887.1 | + | 15203 | 0.69 | 0.494481 |
Target: 5'- aGUACGgcggcaaCCUGCAgGCGa-UGAUCGCCg -3' miRNA: 3'- -CAUGCg------GGACGUaCGCaaGCUAGCGG- -5' |
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28077 | 5' | -54.4 | NC_005887.1 | + | 40141 | 0.69 | 0.515828 |
Target: 5'- gGUGCGCgCUGCGcGCcg-CGcUCGCCg -3' miRNA: 3'- -CAUGCGgGACGUaCGcaaGCuAGCGG- -5' |
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28077 | 5' | -54.4 | NC_005887.1 | + | 7699 | 0.69 | 0.524472 |
Target: 5'- -gGCGCCCgcaaguacgaggGCgAUGUGUUCGAcaUGCCg -3' miRNA: 3'- caUGCGGGa-----------CG-UACGCAAGCUa-GCGG- -5' |
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28077 | 5' | -54.4 | NC_005887.1 | + | 31176 | 0.68 | 0.570657 |
Target: 5'- -cGCGCCaCUugugcucggGCAUGCGcgcguagauUUCGggCGCCg -3' miRNA: 3'- caUGCGG-GA---------CGUACGC---------AAGCuaGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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