miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28079 3' -61.6 NC_005887.1 + 421 0.7 0.178796
Target:  5'- gCCGc-GCCGCCCGCuGUU-GCUGCGc -3'
miRNA:   3'- gGGCaaCGGCGGGCGuCAGuCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 1772 0.68 0.256621
Target:  5'- cCUCGacaUGCuCGaCCUGCGcGUCGGCCGCu -3'
miRNA:   3'- -GGGCa--ACG-GC-GGGCGU-CAGUCGGCGu -5'
28079 3' -61.6 NC_005887.1 + 3247 0.67 0.305009
Target:  5'- aCCGc-GCCGCUCGCGcugcgcaacuucGUC-GCCGCGa -3'
miRNA:   3'- gGGCaaCGGCGGGCGU------------CAGuCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 4231 0.66 0.327795
Target:  5'- -gCG-UGCUGCUCGCGccgacgcUCGGCCGCAc -3'
miRNA:   3'- ggGCaACGGCGGGCGUc------AGUCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 4662 0.67 0.305009
Target:  5'- cCCCGgcGUCGCUugcaUGCGGggCGGCUGCu -3'
miRNA:   3'- -GGGCaaCGGCGG----GCGUCa-GUCGGCGu -5'
28079 3' -61.6 NC_005887.1 + 5089 0.67 0.269771
Target:  5'- uCCCGagaaauccagcgacgUGCCGCCgGguGUCgagcucaAGCCGUg -3'
miRNA:   3'- -GGGCa--------------ACGGCGGgCguCAG-------UCGGCGu -5'
28079 3' -61.6 NC_005887.1 + 5432 0.67 0.283457
Target:  5'- aCCGgcgcgaccacGCCGCCCGCuGgcacuccuGCCGCAu -3'
miRNA:   3'- gGGCaa--------CGGCGGGCGuCagu-----CGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 5500 0.68 0.231901
Target:  5'- aCCG--GCCGCagcaccggCCGCAGcacCGGCCGCAg -3'
miRNA:   3'- gGGCaaCGGCG--------GGCGUCa--GUCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 5832 0.72 0.12953
Target:  5'- aCCUGccGCCGCCCgaugcuGCGGUCGaCCGCAc -3'
miRNA:   3'- -GGGCaaCGGCGGG------CGUCAGUcGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 6992 0.67 0.305009
Target:  5'- gCCCGcguggUGCCgggcgugaaGCUCGUGGcCGGCCGCc -3'
miRNA:   3'- -GGGCa----ACGG---------CGGGCGUCaGUCGGCGu -5'
28079 3' -61.6 NC_005887.1 + 7285 0.74 0.098388
Target:  5'- cCCCG--GCCGCCCGCuGUgGGUCGUc -3'
miRNA:   3'- -GGGCaaCGGCGGGCGuCAgUCGGCGu -5'
28079 3' -61.6 NC_005887.1 + 8050 1.09 0.000162
Target:  5'- aCCCGUUGCCGCCCGCAGUCAGCCGCAc -3'
miRNA:   3'- -GGGCAACGGCGGGCGUCAGUCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 9032 0.68 0.237886
Target:  5'- gCCCGUgacguuugucgGCgGCCCGUucgCGGCCGUg -3'
miRNA:   3'- -GGGCAa----------CGgCGGGCGucaGUCGGCGu -5'
28079 3' -61.6 NC_005887.1 + 10300 0.68 0.250245
Target:  5'- uCCCGUUuCCGUCUGCGggcGUCGGugccCCGCAc -3'
miRNA:   3'- -GGGCAAcGGCGGGCGU---CAGUC----GGCGU- -5'
28079 3' -61.6 NC_005887.1 + 11407 0.67 0.283457
Target:  5'- gCCGgcGCCGCCaagGCAucGUCugagcgccaacaGGCCGCGa -3'
miRNA:   3'- gGGCaaCGGCGGg--CGU--CAG------------UCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 12981 0.66 0.335666
Target:  5'- gCCGagggcaUGCCGCUCGCGG-CuGCCGgGu -3'
miRNA:   3'- gGGCa-----ACGGCGGGCGUCaGuCGGCgU- -5'
28079 3' -61.6 NC_005887.1 + 14179 0.66 0.320062
Target:  5'- gCCCGaUGuuGCUCGacgacCAGUCGGCgUGCGa -3'
miRNA:   3'- -GGGCaACggCGGGC-----GUCAGUCG-GCGU- -5'
28079 3' -61.6 NC_005887.1 + 15198 0.67 0.269771
Target:  5'- aCCCG----CGCCCGUGGccguUCGGCCGCGu -3'
miRNA:   3'- -GGGCaacgGCGGGCGUC----AGUCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 15232 0.68 0.237886
Target:  5'- gCCGacuacaacgGCgGCCCgaaGCAGgCAGCCGCAg -3'
miRNA:   3'- gGGCaa-------CGgCGGG---CGUCaGUCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 15630 0.66 0.326238
Target:  5'- gCCCGgucuaugucgaGCUGCCCGCGGccgcgcgaCGGCUGUAu -3'
miRNA:   3'- -GGGCaa---------CGGCGGGCGUCa-------GUCGGCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.