Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28079 | 3' | -61.6 | NC_005887.1 | + | 421 | 0.7 | 0.178796 |
Target: 5'- gCCGc-GCCGCCCGCuGUU-GCUGCGc -3' miRNA: 3'- gGGCaaCGGCGGGCGuCAGuCGGCGU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 1772 | 0.68 | 0.256621 |
Target: 5'- cCUCGacaUGCuCGaCCUGCGcGUCGGCCGCu -3' miRNA: 3'- -GGGCa--ACG-GC-GGGCGU-CAGUCGGCGu -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 3247 | 0.67 | 0.305009 |
Target: 5'- aCCGc-GCCGCUCGCGcugcgcaacuucGUC-GCCGCGa -3' miRNA: 3'- gGGCaaCGGCGGGCGU------------CAGuCGGCGU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 4231 | 0.66 | 0.327795 |
Target: 5'- -gCG-UGCUGCUCGCGccgacgcUCGGCCGCAc -3' miRNA: 3'- ggGCaACGGCGGGCGUc------AGUCGGCGU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 4662 | 0.67 | 0.305009 |
Target: 5'- cCCCGgcGUCGCUugcaUGCGGggCGGCUGCu -3' miRNA: 3'- -GGGCaaCGGCGG----GCGUCa-GUCGGCGu -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 5089 | 0.67 | 0.269771 |
Target: 5'- uCCCGagaaauccagcgacgUGCCGCCgGguGUCgagcucaAGCCGUg -3' miRNA: 3'- -GGGCa--------------ACGGCGGgCguCAG-------UCGGCGu -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 5432 | 0.67 | 0.283457 |
Target: 5'- aCCGgcgcgaccacGCCGCCCGCuGgcacuccuGCCGCAu -3' miRNA: 3'- gGGCaa--------CGGCGGGCGuCagu-----CGGCGU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 5500 | 0.68 | 0.231901 |
Target: 5'- aCCG--GCCGCagcaccggCCGCAGcacCGGCCGCAg -3' miRNA: 3'- gGGCaaCGGCG--------GGCGUCa--GUCGGCGU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 5832 | 0.72 | 0.12953 |
Target: 5'- aCCUGccGCCGCCCgaugcuGCGGUCGaCCGCAc -3' miRNA: 3'- -GGGCaaCGGCGGG------CGUCAGUcGGCGU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 6992 | 0.67 | 0.305009 |
Target: 5'- gCCCGcguggUGCCgggcgugaaGCUCGUGGcCGGCCGCc -3' miRNA: 3'- -GGGCa----ACGG---------CGGGCGUCaGUCGGCGu -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 7285 | 0.74 | 0.098388 |
Target: 5'- cCCCG--GCCGCCCGCuGUgGGUCGUc -3' miRNA: 3'- -GGGCaaCGGCGGGCGuCAgUCGGCGu -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 8050 | 1.09 | 0.000162 |
Target: 5'- aCCCGUUGCCGCCCGCAGUCAGCCGCAc -3' miRNA: 3'- -GGGCAACGGCGGGCGUCAGUCGGCGU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 9032 | 0.68 | 0.237886 |
Target: 5'- gCCCGUgacguuugucgGCgGCCCGUucgCGGCCGUg -3' miRNA: 3'- -GGGCAa----------CGgCGGGCGucaGUCGGCGu -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 10300 | 0.68 | 0.250245 |
Target: 5'- uCCCGUUuCCGUCUGCGggcGUCGGugccCCGCAc -3' miRNA: 3'- -GGGCAAcGGCGGGCGU---CAGUC----GGCGU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 11407 | 0.67 | 0.283457 |
Target: 5'- gCCGgcGCCGCCaagGCAucGUCugagcgccaacaGGCCGCGa -3' miRNA: 3'- gGGCaaCGGCGGg--CGU--CAG------------UCGGCGU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 12981 | 0.66 | 0.335666 |
Target: 5'- gCCGagggcaUGCCGCUCGCGG-CuGCCGgGu -3' miRNA: 3'- gGGCa-----ACGGCGGGCGUCaGuCGGCgU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 14179 | 0.66 | 0.320062 |
Target: 5'- gCCCGaUGuuGCUCGacgacCAGUCGGCgUGCGa -3' miRNA: 3'- -GGGCaACggCGGGC-----GUCAGUCG-GCGU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 15198 | 0.67 | 0.269771 |
Target: 5'- aCCCG----CGCCCGUGGccguUCGGCCGCGu -3' miRNA: 3'- -GGGCaacgGCGGGCGUC----AGUCGGCGU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 15232 | 0.68 | 0.237886 |
Target: 5'- gCCGacuacaacgGCgGCCCgaaGCAGgCAGCCGCAg -3' miRNA: 3'- gGGCaa-------CGgCGGG---CGUCaGUCGGCGU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 15630 | 0.66 | 0.326238 |
Target: 5'- gCCCGgucuaugucgaGCUGCCCGCGGccgcgcgaCGGCUGUAu -3' miRNA: 3'- -GGGCaa---------CGGCGGGCGUCa-------GUCGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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