miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28079 3' -61.6 NC_005887.1 + 32835 0.66 0.351817
Target:  5'- -aCGUgaugGCCGCCgUGCAgGUCAaGCgGCAu -3'
miRNA:   3'- ggGCAa---CGGCGG-GCGU-CAGU-CGgCGU- -5'
28079 3' -61.6 NC_005887.1 + 11407 0.67 0.283457
Target:  5'- gCCGgcGCCGCCaagGCAucGUCugagcgccaacaGGCCGCGa -3'
miRNA:   3'- gGGCaaCGGCGGg--CGU--CAG------------UCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 5432 0.67 0.283457
Target:  5'- aCCGgcgcgaccacGCCGCCCGCuGgcacuccuGCCGCAu -3'
miRNA:   3'- gGGCaa--------CGGCGGGCGuCagu-----CGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 24887 0.67 0.295518
Target:  5'- gCCGaUGCCGCgcgcucggucuucuUCGCAG-CAGCCGgAu -3'
miRNA:   3'- gGGCaACGGCG--------------GGCGUCaGUCGGCgU- -5'
28079 3' -61.6 NC_005887.1 + 3247 0.67 0.305009
Target:  5'- aCCGc-GCCGCUCGCGcugcgcaacuucGUC-GCCGCGa -3'
miRNA:   3'- gGGCaaCGGCGGGCGU------------CAGuCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 28570 0.66 0.312467
Target:  5'- -gCGUcGCCGCCCGCuGcgCGGaCGCGg -3'
miRNA:   3'- ggGCAaCGGCGGGCGuCa-GUCgGCGU- -5'
28079 3' -61.6 NC_005887.1 + 25019 0.66 0.327016
Target:  5'- gCCGgcgGCCGCCggccagccgguagCGCAGaaccCAuGCCGCAg -3'
miRNA:   3'- gGGCaa-CGGCGG-------------GCGUCa---GU-CGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 4231 0.66 0.327795
Target:  5'- -gCG-UGCUGCUCGCGccgacgcUCGGCCGCAc -3'
miRNA:   3'- ggGCaACGGCGGGCGUc------AGUCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 30269 0.66 0.346915
Target:  5'- gCCGUccggcgcgacgaucgUGCCGCgcacgacguUCGCAGUCAGgCCGa- -3'
miRNA:   3'- gGGCA---------------ACGGCG---------GGCGUCAGUC-GGCgu -5'
28079 3' -61.6 NC_005887.1 + 18641 0.67 0.276546
Target:  5'- gCCCGcUGCUGUCgaCGCuGUucCAGCCGCu -3'
miRNA:   3'- -GGGCaACGGCGG--GCGuCA--GUCGGCGu -5'
28079 3' -61.6 NC_005887.1 + 31252 0.67 0.26977
Target:  5'- aCCGUU-CUGCCaccaGUAcucGUCGGCCGCGu -3'
miRNA:   3'- gGGCAAcGGCGGg---CGU---CAGUCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 23431 0.67 0.26977
Target:  5'- gCUCGUcgcaGCCGCCCGCcaUCccGCCGCu -3'
miRNA:   3'- -GGGCAa---CGGCGGGCGucAGu-CGGCGu -5'
28079 3' -61.6 NC_005887.1 + 7285 0.74 0.098388
Target:  5'- cCCCG--GCCGCCCGCuGUgGGUCGUc -3'
miRNA:   3'- -GGGCaaCGGCGGGCGuCAgUCGGCGu -5'
28079 3' -61.6 NC_005887.1 + 23555 0.7 0.174124
Target:  5'- gCUGacGCCGCCCGCAucGcCGGCCgGCAg -3'
miRNA:   3'- gGGCaaCGGCGGGCGU--CaGUCGG-CGU- -5'
28079 3' -61.6 NC_005887.1 + 421 0.7 0.178796
Target:  5'- gCCGc-GCCGCCCGCuGUU-GCUGCGc -3'
miRNA:   3'- gGGCaaCGGCGGGCGuCAGuCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 5500 0.68 0.231901
Target:  5'- aCCG--GCCGCagcaccggCCGCAGcacCGGCCGCAg -3'
miRNA:   3'- gGGCaaCGGCG--------GGCGUCa--GUCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 15232 0.68 0.237886
Target:  5'- gCCGacuacaacgGCgGCCCgaaGCAGgCAGCCGCAg -3'
miRNA:   3'- gGGCaa-------CGgCGGG---CGUCaGUCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 9032 0.68 0.237886
Target:  5'- gCCCGUgacguuugucgGCgGCCCGUucgCGGCCGUg -3'
miRNA:   3'- -GGGCAa----------CGgCGGGCGucaGUCGGCGu -5'
28079 3' -61.6 NC_005887.1 + 1772 0.68 0.256621
Target:  5'- cCUCGacaUGCuCGaCCUGCGcGUCGGCCGCu -3'
miRNA:   3'- -GGGCa--ACG-GC-GGGCGU-CAGUCGGCGu -5'
28079 3' -61.6 NC_005887.1 + 26307 0.68 0.263129
Target:  5'- -aUGUUGCCGCCguccUGCAGguucaGGCCGUg -3'
miRNA:   3'- ggGCAACGGCGG----GCGUCag---UCGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.