Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28079 | 3' | -61.6 | NC_005887.1 | + | 12981 | 0.66 | 0.335666 |
Target: 5'- gCCGagggcaUGCCGCUCGCGG-CuGCCGgGu -3' miRNA: 3'- gGGCa-----ACGGCGGGCGUCaGuCGGCgU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 37832 | 0.69 | 0.19861 |
Target: 5'- aCCGggacGCCG-CCGUAGUCGGCgaGCAg -3' miRNA: 3'- gGGCaa--CGGCgGGCGUCAGUCGg-CGU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 36947 | 0.69 | 0.193484 |
Target: 5'- -gCGgcGCCGCCCGcCGGUucacCGGUCGCGc -3' miRNA: 3'- ggGCaaCGGCGGGC-GUCA----GUCGGCGU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 8050 | 1.09 | 0.000162 |
Target: 5'- aCCCGUUGCCGCCCGCAGUCAGCCGCAc -3' miRNA: 3'- -GGGCAACGGCGGGCGUCAGUCGGCGU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 41813 | 0.66 | 0.312467 |
Target: 5'- aUCCGgcGCgGCgCGCGG-CGGCCGaCGc -3' miRNA: 3'- -GGGCaaCGgCGgGCGUCaGUCGGC-GU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 4662 | 0.67 | 0.305009 |
Target: 5'- cCCCGgcGUCGCUugcaUGCGGggCGGCUGCu -3' miRNA: 3'- -GGGCaaCGGCGG----GCGUCa-GUCGGCGu -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 6992 | 0.67 | 0.305009 |
Target: 5'- gCCCGcguggUGCCgggcgugaaGCUCGUGGcCGGCCGCc -3' miRNA: 3'- -GGGCa----ACGG---------CGGGCGUCaGUCGGCGu -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 35083 | 0.67 | 0.297688 |
Target: 5'- gCCGggGCCGaugUCGCGGUC-GCUGCc -3' miRNA: 3'- gGGCaaCGGCg--GGCGUCAGuCGGCGu -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 25393 | 0.68 | 0.263129 |
Target: 5'- gCCGacaUUGCCGCCCGCgcGGUUgaAGCgcucaCGCAu -3' miRNA: 3'- gGGC---AACGGCGGGCG--UCAG--UCG-----GCGU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 18364 | 0.69 | 0.209218 |
Target: 5'- uCCCGagcGCCGCCUcgcgcucgaGCAGUgGGCCGa- -3' miRNA: 3'- -GGGCaa-CGGCGGG---------CGUCAgUCGGCgu -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 10300 | 0.68 | 0.250245 |
Target: 5'- uCCCGUUuCCGUCUGCGggcGUCGGugccCCGCAc -3' miRNA: 3'- -GGGCAAcGGCGGGCGU---CAGUC----GGCGU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 5089 | 0.67 | 0.269771 |
Target: 5'- uCCCGagaaauccagcgacgUGCCGCCgGguGUCgagcucaAGCCGUg -3' miRNA: 3'- -GGGCa--------------ACGGCGGgCguCAG-------UCGGCGu -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 35613 | 0.66 | 0.327016 |
Target: 5'- gCCGUUGCCGUCCGCAuUUucgauggugaccuGGCCc-- -3' miRNA: 3'- gGGCAACGGCGGGCGUcAG-------------UCGGcgu -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 16350 | 0.68 | 0.244001 |
Target: 5'- cCCCGacGCCGCCCGUga--AGCUGUAc -3' miRNA: 3'- -GGGCaaCGGCGGGCGucagUCGGCGU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 15630 | 0.66 | 0.326238 |
Target: 5'- gCCCGgucuaugucgaGCUGCCCGCGGccgcgcgaCGGCUGUAu -3' miRNA: 3'- -GGGCaa---------CGGCGGGCGUCa-------GUCGGCGU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 15198 | 0.67 | 0.269771 |
Target: 5'- aCCCG----CGCCCGUGGccguUCGGCCGCGu -3' miRNA: 3'- -GGGCaacgGCGGGCGUC----AGUCGGCGU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 22342 | 0.69 | 0.22031 |
Target: 5'- -gUGUUGUCGCCCugcaugaugauGCAGUCuccGGUCGCAu -3' miRNA: 3'- ggGCAACGGCGGG-----------CGUCAG---UCGGCGU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 27128 | 0.69 | 0.198092 |
Target: 5'- gCCGUUGUagucggcgaucauCGCCUGCAGguuGCCGCc -3' miRNA: 3'- gGGCAACG-------------GCGGGCGUCaguCGGCGu -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 14179 | 0.66 | 0.320062 |
Target: 5'- gCCCGaUGuuGCUCGacgacCAGUCGGCgUGCGa -3' miRNA: 3'- -GGGCaACggCGGGC-----GUCAGUCG-GCGU- -5' |
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28079 | 3' | -61.6 | NC_005887.1 | + | 39325 | 0.67 | 0.305009 |
Target: 5'- gCCGagcaugGCUuuGCCCGCGGcgCuGGCCGCAg -3' miRNA: 3'- gGGCaa----CGG--CGGGCGUCa-G-UCGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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