miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28079 3' -61.6 NC_005887.1 + 41813 0.66 0.312467
Target:  5'- aUCCGgcGCgGCgCGCGG-CGGCCGaCGc -3'
miRNA:   3'- -GGGCaaCGgCGgGCGUCaGUCGGC-GU- -5'
28079 3' -61.6 NC_005887.1 + 41618 0.66 0.351817
Target:  5'- gCCGgcGCgGCCCGUgaGGaUCuGCUGCGu -3'
miRNA:   3'- gGGCaaCGgCGGGCG--UC-AGuCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 39325 0.67 0.305009
Target:  5'- gCCGagcaugGCUuuGCCCGCGGcgCuGGCCGCAg -3'
miRNA:   3'- gGGCaa----CGG--CGGGCGUCa-G-UCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 37832 0.69 0.19861
Target:  5'- aCCGggacGCCG-CCGUAGUCGGCgaGCAg -3'
miRNA:   3'- gGGCaa--CGGCgGGCGUCAGUCGg-CGU- -5'
28079 3' -61.6 NC_005887.1 + 36947 0.69 0.193484
Target:  5'- -gCGgcGCCGCCCGcCGGUucacCGGUCGCGc -3'
miRNA:   3'- ggGCaaCGGCGGGC-GUCA----GUCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 35613 0.66 0.327016
Target:  5'- gCCGUUGCCGUCCGCAuUUucgauggugaccuGGCCc-- -3'
miRNA:   3'- gGGCAACGGCGGGCGUcAG-------------UCGGcgu -5'
28079 3' -61.6 NC_005887.1 + 35083 0.67 0.297688
Target:  5'- gCCGggGCCGaugUCGCGGUC-GCUGCc -3'
miRNA:   3'- gGGCaaCGGCg--GGCGUCAGuCGGCGu -5'
28079 3' -61.6 NC_005887.1 + 32835 0.66 0.351817
Target:  5'- -aCGUgaugGCCGCCgUGCAgGUCAaGCgGCAu -3'
miRNA:   3'- ggGCAa---CGGCGG-GCGU-CAGU-CGgCGU- -5'
28079 3' -61.6 NC_005887.1 + 31252 0.67 0.26977
Target:  5'- aCCGUU-CUGCCaccaGUAcucGUCGGCCGCGu -3'
miRNA:   3'- gGGCAAcGGCGGg---CGU---CAGUCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 30269 0.66 0.346915
Target:  5'- gCCGUccggcgcgacgaucgUGCCGCgcacgacguUCGCAGUCAGgCCGa- -3'
miRNA:   3'- gGGCA---------------ACGGCG---------GGCGUCAGUC-GGCgu -5'
28079 3' -61.6 NC_005887.1 + 28647 0.71 0.152365
Target:  5'- gCCGUUgaucugcugGCCGCCCGUGGUCGagaucccacccGUCGCGc -3'
miRNA:   3'- gGGCAA---------CGGCGGGCGUCAGU-----------CGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 28570 0.66 0.312467
Target:  5'- -gCGUcGCCGCCCGCuGcgCGGaCGCGg -3'
miRNA:   3'- ggGCAaCGGCGGGCGuCa-GUCgGCGU- -5'
28079 3' -61.6 NC_005887.1 + 27128 0.69 0.198092
Target:  5'- gCCGUUGUagucggcgaucauCGCCUGCAGguuGCCGCc -3'
miRNA:   3'- gGGCAACG-------------GCGGGCGUCaguCGGCGu -5'
28079 3' -61.6 NC_005887.1 + 26307 0.68 0.263129
Target:  5'- -aUGUUGCCGCCguccUGCAGguucaGGCCGUg -3'
miRNA:   3'- ggGCAACGGCGG----GCGUCag---UCGGCGu -5'
28079 3' -61.6 NC_005887.1 + 25435 0.68 0.256621
Target:  5'- gCCCGUcgucuUGCCGaUCUGC--UCGGCUGCAg -3'
miRNA:   3'- -GGGCA-----ACGGC-GGGCGucAGUCGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 25393 0.68 0.263129
Target:  5'- gCCGacaUUGCCGCCCGCgcGGUUgaAGCgcucaCGCAu -3'
miRNA:   3'- gGGC---AACGGCGGGCG--UCAG--UCG-----GCGU- -5'
28079 3' -61.6 NC_005887.1 + 25019 0.66 0.327016
Target:  5'- gCCGgcgGCCGCCggccagccgguagCGCAGaaccCAuGCCGCAg -3'
miRNA:   3'- gGGCaa-CGGCGG-------------GCGUCa---GU-CGGCGU- -5'
28079 3' -61.6 NC_005887.1 + 24887 0.67 0.295518
Target:  5'- gCCGaUGCCGCgcgcucggucuucuUCGCAG-CAGCCGgAu -3'
miRNA:   3'- gGGCaACGGCG--------------GGCGUCaGUCGGCgU- -5'
28079 3' -61.6 NC_005887.1 + 23555 0.7 0.174124
Target:  5'- gCUGacGCCGCCCGCAucGcCGGCCgGCAg -3'
miRNA:   3'- gGGCaaCGGCGGGCGU--CaGUCGG-CGU- -5'
28079 3' -61.6 NC_005887.1 + 23431 0.67 0.26977
Target:  5'- gCUCGUcgcaGCCGCCCGCcaUCccGCCGCu -3'
miRNA:   3'- -GGGCAa---CGGCGGGCGucAGu-CGGCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.