miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28080 3' -51.2 NC_005887.1 + 32849 0.66 0.85373
Target:  5'- aCGGUGUUCGgcAGCaugCCGgGGuCGGCc -3'
miRNA:   3'- -GCUACGAGCuuUCGaa-GGCgUC-GUUG- -5'
28080 3' -51.2 NC_005887.1 + 25547 0.66 0.85373
Target:  5'- gCGGUGCgcguUCGuagcuGCUUCCGCGuGCGc- -3'
miRNA:   3'- -GCUACG----AGCuuu--CGAAGGCGU-CGUug -5'
28080 3' -51.2 NC_005887.1 + 16573 0.66 0.85373
Target:  5'- cCGAU-CUCGAccGGGC--CCGCAaGCAACu -3'
miRNA:   3'- -GCUAcGAGCU--UUCGaaGGCGU-CGUUG- -5'
28080 3' -51.2 NC_005887.1 + 34423 0.66 0.85373
Target:  5'- uCGA-GCUCGuccucGGUUUCCGgAGCGGu -3'
miRNA:   3'- -GCUaCGAGCuu---UCGAAGGCgUCGUUg -5'
28080 3' -51.2 NC_005887.1 + 33946 0.66 0.85373
Target:  5'- aCGgcGCUCGGcGAGCacgUCGCGuGCGGCg -3'
miRNA:   3'- -GCuaCGAGCU-UUCGaa-GGCGU-CGUUG- -5'
28080 3' -51.2 NC_005887.1 + 38401 0.66 0.844686
Target:  5'- gGcgGgUCGAcGAGCUUCUGCGcGCcGCg -3'
miRNA:   3'- gCuaCgAGCU-UUCGAAGGCGU-CGuUG- -5'
28080 3' -51.2 NC_005887.1 + 14678 0.66 0.844686
Target:  5'- uGAUGCagaCGAucAAGCcgcgCgCGCGGCAGCu -3'
miRNA:   3'- gCUACGa--GCU--UUCGaa--G-GCGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 7011 0.66 0.844686
Target:  5'- uGAaGCUCGu-GGCcggCCGCcGCGGCg -3'
miRNA:   3'- gCUaCGAGCuuUCGaa-GGCGuCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 8384 0.66 0.835391
Target:  5'- cCGGUGCU-GAcGGacgCCGCAcGCGACg -3'
miRNA:   3'- -GCUACGAgCUuUCgaaGGCGU-CGUUG- -5'
28080 3' -51.2 NC_005887.1 + 28925 0.66 0.835391
Target:  5'- gCGGUGCgcc---GCUcgUCGCAGCAGCg -3'
miRNA:   3'- -GCUACGagcuuuCGAa-GGCGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 39416 0.66 0.835391
Target:  5'- gCGGUGCcgCGGc-GCUUgCGCAGCuuGGCg -3'
miRNA:   3'- -GCUACGa-GCUuuCGAAgGCGUCG--UUG- -5'
28080 3' -51.2 NC_005887.1 + 5955 0.66 0.835391
Target:  5'- uCGAUaaGCUCGcuGGCgcgUCCgGCGauGCAGCa -3'
miRNA:   3'- -GCUA--CGAGCuuUCGa--AGG-CGU--CGUUG- -5'
28080 3' -51.2 NC_005887.1 + 19385 0.66 0.806111
Target:  5'- -cAUGCUCGcgcAGCUgCCGCAG-AGCg -3'
miRNA:   3'- gcUACGAGCuu-UCGAaGGCGUCgUUG- -5'
28080 3' -51.2 NC_005887.1 + 22409 0.67 0.795925
Target:  5'- uCGAaGCgccaCGGAGGCUgacaCCggGCGGCAGCg -3'
miRNA:   3'- -GCUaCGa---GCUUUCGAa---GG--CGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 8418 0.67 0.785548
Target:  5'- cCGA-GCaCGAccAGGCUaucgCCGCAGCGAUc -3'
miRNA:   3'- -GCUaCGaGCU--UUCGAa---GGCGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 10674 0.67 0.785548
Target:  5'- aCGAU-CUCGAgcaacuGAGCUUCCGUAagccgucgaacGCGAUg -3'
miRNA:   3'- -GCUAcGAGCU------UUCGAAGGCGU-----------CGUUG- -5'
28080 3' -51.2 NC_005887.1 + 12741 0.67 0.774991
Target:  5'- ---cGCUCGAucGCg-CCGCGcuGCAACg -3'
miRNA:   3'- gcuaCGAGCUuuCGaaGGCGU--CGUUG- -5'
28080 3' -51.2 NC_005887.1 + 24888 0.67 0.774991
Target:  5'- cCGAUGC-CGcgcGCUcggucuucUUCGCAGCAGCc -3'
miRNA:   3'- -GCUACGaGCuuuCGA--------AGGCGUCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 34509 0.67 0.764268
Target:  5'- -cAUGCUCGAcguGCUgUCGCuGCGACc -3'
miRNA:   3'- gcUACGAGCUuu-CGAaGGCGuCGUUG- -5'
28080 3' -51.2 NC_005887.1 + 41522 0.67 0.764268
Target:  5'- aCGGUGCUCGGcAAGa-UCCGCgaGGCGc- -3'
miRNA:   3'- -GCUACGAGCU-UUCgaAGGCG--UCGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.