miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28081 5' -49.4 NC_005887.1 + 7947 0.66 0.944862
Target:  5'- -gUCGGAAUcugUAACCGCgCGcuGACGa -3'
miRNA:   3'- ggAGCUUUAa--GUUGGCGgGCuuCUGC- -5'
28081 5' -49.4 NC_005887.1 + 19148 0.66 0.934281
Target:  5'- cCCUUGAAGU--AGCCGCCCccGGcCGu -3'
miRNA:   3'- -GGAGCUUUAagUUGGCGGGcuUCuGC- -5'
28081 5' -49.4 NC_005887.1 + 24088 0.66 0.934281
Target:  5'- --aCGAcuuuUUCAGCuCGCCCGu-GACGg -3'
miRNA:   3'- ggaGCUuu--AAGUUG-GCGGGCuuCUGC- -5'
28081 5' -49.4 NC_005887.1 + 5748 0.66 0.934281
Target:  5'- --cCGGGAUUcCGGCCgagGCCgCGAAGGCGc -3'
miRNA:   3'- ggaGCUUUAA-GUUGG---CGG-GCUUCUGC- -5'
28081 5' -49.4 NC_005887.1 + 6445 0.66 0.934281
Target:  5'- aCCgCGgcAUUCcguCUGUCCGAAGACc -3'
miRNA:   3'- -GGaGCuuUAAGuu-GGCGGGCUUCUGc -5'
28081 5' -49.4 NC_005887.1 + 39145 0.66 0.934281
Target:  5'- uUUCGAg---CGGCCGCUcucccauuCGGAGACGg -3'
miRNA:   3'- gGAGCUuuaaGUUGGCGG--------GCUUCUGC- -5'
28081 5' -49.4 NC_005887.1 + 14891 0.67 0.92854
Target:  5'- gCUCGAGAUUCcg-CGCUCGAAcguGugGg -3'
miRNA:   3'- gGAGCUUUAAGuugGCGGGCUU---CugC- -5'
28081 5' -49.4 NC_005887.1 + 17389 0.67 0.92854
Target:  5'- cCCUCG-----CGGCCGCgCGcAAGGCGg -3'
miRNA:   3'- -GGAGCuuuaaGUUGGCGgGC-UUCUGC- -5'
28081 5' -49.4 NC_005887.1 + 28960 0.67 0.922498
Target:  5'- uCCUCGAc-UUCgAGCCGgaCGAAGugGa -3'
miRNA:   3'- -GGAGCUuuAAG-UUGGCggGCUUCugC- -5'
28081 5' -49.4 NC_005887.1 + 4458 0.67 0.916154
Target:  5'- gUCUCGcAGUUCGACCcggcuGCCgCGAAGGu- -3'
miRNA:   3'- -GGAGCuUUAAGUUGG-----CGG-GCUUCUgc -5'
28081 5' -49.4 NC_005887.1 + 7278 0.67 0.909511
Target:  5'- aCUUCGAAG-UCG--CGCCCGccGACGa -3'
miRNA:   3'- -GGAGCUUUaAGUugGCGGGCuuCUGC- -5'
28081 5' -49.4 NC_005887.1 + 3170 0.67 0.909511
Target:  5'- gCCUCGAcaAGUUCGggcaGCUGCCgCGcccGGACa -3'
miRNA:   3'- -GGAGCU--UUAAGU----UGGCGG-GCu--UCUGc -5'
28081 5' -49.4 NC_005887.1 + 39803 0.67 0.902569
Target:  5'- --gCGGAAgcagUAGCCGCCCGAcaGCGc -3'
miRNA:   3'- ggaGCUUUaa--GUUGGCGGGCUucUGC- -5'
28081 5' -49.4 NC_005887.1 + 14003 0.67 0.902569
Target:  5'- gCUCGAAGccaauGCCGCgCCGGcgcAGACGc -3'
miRNA:   3'- gGAGCUUUaagu-UGGCG-GGCU---UCUGC- -5'
28081 5' -49.4 NC_005887.1 + 3200 0.68 0.895334
Target:  5'- gUCUCcGAAUgggagagCGGCCGCUCGAaaccGGACGc -3'
miRNA:   3'- -GGAGcUUUAa------GUUGGCGGGCU----UCUGC- -5'
28081 5' -49.4 NC_005887.1 + 2898 0.68 0.863552
Target:  5'- --aCGGAcacgUCGGCCGCCgCGAAcGACGc -3'
miRNA:   3'- ggaGCUUua--AGUUGGCGG-GCUU-CUGC- -5'
28081 5' -49.4 NC_005887.1 + 375 0.69 0.840609
Target:  5'- uCCUCGAucucuggugcgaaaaGAcgggCAAgCGCCgCGAAGACGc -3'
miRNA:   3'- -GGAGCU---------------UUaa--GUUgGCGG-GCUUCUGC- -5'
28081 5' -49.4 NC_005887.1 + 4941 0.69 0.815079
Target:  5'- uCCUCGGGAUggaagacgcgcagcUCAACUcCCUGAAGgACGa -3'
miRNA:   3'- -GGAGCUUUA--------------AGUUGGcGGGCUUC-UGC- -5'
28081 5' -49.4 NC_005887.1 + 8462 0.7 0.798207
Target:  5'- -aUCGAGcgcccggcgCAACCGCUCGgcGACGa -3'
miRNA:   3'- ggAGCUUuaa------GUUGGCGGGCuuCUGC- -5'
28081 5' -49.4 NC_005887.1 + 21314 0.7 0.788023
Target:  5'- aCCugUCGAGA--CGAUCGCCUGAccGGACGu -3'
miRNA:   3'- -GG--AGCUUUaaGUUGGCGGGCU--UCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.